Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU6-196P-201ENST00000384315 107 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 RNU6-520P-201ENST00000384717 104 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 U6atac.1-201ENST00000616025 117 ntBASIC-2.08□□□□□ -2.74
CHD9Q3L8U1 SNORD116-22-201ENST00000384430 92 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 SNORA40-201ENST00000388090 126 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.343-201ENST00000365354 112 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 RNU6-402P-201ENST00000410678 103 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 MTND4LP9-201ENST00000427694 174 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 AP000770.2-201ENST00000623694 100 ntBASIC-2.09□□□□□ -2.74
CHD9Q3L8U1 Y_RNA.15-201ENST00000362420 102 ntBASIC-2.1□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.11□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.668-201ENST00000516233 93 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 RNU6-742P-201ENST00000365289 107 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 MIR4317-201ENST00000637586 65 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 SNORA63.4-201ENST00000362763 126 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 RNU6-659P-201ENST00000516454 104 ntBASIC-2.12□□□□□ -2.75
CHD9Q3L8U1 SNORD116-21-201ENST00000384507 92 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 RNU6-68P-201ENST00000516576 104 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 MIR548X2-201ENST00000579776 100 ntBASIC-2.13□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.350-201ENST00000365409 98 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 SNORA25.5-201ENST00000363782 126 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 RNU6-1160P-201ENST00000384546 104 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 RNU6-162P-201ENST00000516228 103 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 SNORA40.13-201ENST00000516379 120 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 MIR548AI-201ENST00000579940 88 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 U6.95-201ENST00000636931 70 ntBASIC-2.14□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 MTND4P29-201ENST00000503122 1372 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 MIR4795-201ENST00000584182 89 ntBASIC-2.15□□□□□ -2.75
CHD9Q3L8U1 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 RNU6-797P-201ENST00000363101 109 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.107-201ENST00000363190 121 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 MIR1254-1-201ENST00000408257 97 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 AL451105.1-201ENST00000450005 189 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 MIR3914-2-201ENST00000637339 95 ntBASIC-2.16□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.290-201ENST00000364879 114 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 MIR590-201ENST00000385008 97 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 SNORD115-45-201ENST00000391078 81 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 RNU6-1023P-201ENST00000516137 106 ntBASIC-2.17□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.422-201ENST00000384054 114 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-380P-201ENST00000410207 107 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-315P-201ENST00000362666 107 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.297-201ENST00000364950 91 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-497P-201ENST00000365316 104 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 RNU6-267P-201ENST00000516714 103 ntBASIC-2.18□□□□□ -2.76
CHD9Q3L8U1 TMSB4XP3-201ENST00000445144 114 ntBASIC-2.19□□□□□ -2.76
CHD9Q3L8U1 MIR548F4-201ENST00000408515 105 ntBASIC-2.19□□□□□ -2.76
CHD9Q3L8U1 AL589823.1-201ENST00000429577 183 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 SNORA40.16-201ENST00000517238 121 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 AC062037.1-201ENST00000605302 128 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 SCARNA15.1-201ENST00000516384 125 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 RNU6-231P-201ENST00000517122 103 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 AC062037.2-201ENST00000610137 73 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.611-201ENST00000410682 108 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 MTND5P41-201ENST00000517498 206 ntBASIC-2.2□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.489-201ENST00000384410 101 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 RNU6-419P-201ENST00000517030 63 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 AC004792.1-201ENST00000614523 137 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 SNORA20.1-201ENST00000364790 130 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 MTATP8P1-201ENST00000467115 207 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 MIR4801-201ENST00000582704 82 ntBASIC-2.21□□□□□ -2.76
CHD9Q3L8U1 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.22□□□□□ -2.76
CHD9Q3L8U1 RNU6-663P-201ENST00000391105 106 ntBASIC-2.22□□□□□ -2.76
CHD9Q3L8U1 MIR1302-5-201ENST00000408164 150 ntBASIC-2.22□□□□□ -2.76
CHD9Q3L8U1 RNA5SP224-201ENST00000365069 126 ntBASIC-2.22□□□□□ -2.77
CHD9Q3L8U1 AL031737.1-201ENST00000450125 223 ntBASIC-2.22□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.712-201ENST00000517011 92 ntBASIC-2.22□□□□□ -2.77
CHD9Q3L8U1 RNU6-895P-201ENST00000384125 103 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.193-201ENST00000363979 102 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-867P-201ENST00000364956 107 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-109P-201ENST00000516364 107 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-184P-201ENST00000516514 107 ntBASIC-2.23□□□□□ -2.77
CHD9Q3L8U1 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 RNU7-120P-201ENST00000459334 63 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 AC008737.2-201ENST00000599446 118 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 SNORA63-201ENST00000363450 132 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.535-201ENST00000384612 99 ntBASIC-2.24□□□□□ -2.77
CHD9Q3L8U1 MIR4484-201ENST00000582855 83 ntBASIC-2.25□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.216-201ENST00000364205 93 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.218-201ENST00000364218 104 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 MIR569-201ENST00000385228 96 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 AL117351.2-201ENST00000513571 157 ntBASIC-2.26□□□□□ -2.77
CHD9Q3L8U1 RNU6-804P-201ENST00000384286 107 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.165-201ENST00000363721 102 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 RNU6-200P-201ENST00000364743 107 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 MTCYBP9-201ENST00000431021 303 ntBASIC-2.27□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.219-201ENST00000364232 113 ntBASIC-2.28□□□□□ -2.77
CHD9Q3L8U1 RNU6-979P-201ENST00000383896 107 ntBASIC-2.28□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 220 ms