Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 MIR590-201ENST00000385008 97 ntBASIC-3.71□□□□□ -3
USE1Q9NZ43 MIR7978-201ENST00000636158 59 ntBASIC-3.71□□□□□ -3
USE1Q9NZ43 RNU6-200P-201ENST00000364743 107 ntBASIC-3.72□□□□□ -3
USE1Q9NZ43 SNORD60-201ENST00000383903 83 ntBASIC-3.72□□□□□ -3
USE1Q9NZ43 SNORA41B-201ENST00000384785 128 ntBASIC-3.72□□□□□ -3
USE1Q9NZ43 MIR579-201ENST00000385221 98 ntBASIC-3.72□□□□□ -3
USE1Q9NZ43 RNU6-303P-201ENST00000517091 106 ntBASIC-3.72□□□□□ -3
USE1Q9NZ43 MTND5P41-201ENST00000517498 206 ntBASIC-3.72□□□□□ -3
USE1Q9NZ43 RNU6-624P-201ENST00000363411 107 ntBASIC-3.73□□□□□ -3.01
USE1Q9NZ43 RNY4P18-201ENST00000391107 89 ntBASIC-3.73□□□□□ -3.01
USE1Q9NZ43 RNU6-182P-201ENST00000516970 105 ntBASIC-3.73□□□□□ -3.01
USE1Q9NZ43 AC004792.1-201ENST00000614523 137 ntBASIC-3.73□□□□□ -3.01
USE1Q9NZ43 RNA5SP215-201ENST00000363440 122 ntBASIC-3.74□□□□□ -3.01
USE1Q9NZ43 MIR125B1-201ENST00000385236 88 ntBASIC-3.74□□□□□ -3.01
USE1Q9NZ43 RNU6-738P-201ENST00000384531 106 ntBASIC-3.75□□□□□ -3.01
USE1Q9NZ43 RNU6-257P-201ENST00000410238 98 ntBASIC-3.75□□□□□ -3.01
USE1Q9NZ43 MTND4LP1-201ENST00000446263 157 ntBASIC-3.75□□□□□ -3.01
USE1Q9NZ43 RNU6-694P-201ENST00000364071 147 ntBASIC-3.76□□□□□ -3.01
USE1Q9NZ43 Y_RNA.489-201ENST00000384410 101 ntBASIC-3.76□□□□□ -3.01
USE1Q9NZ43 MIR548N-201ENST00000408742 75 ntBASIC-3.76□□□□□ -3.01
USE1Q9NZ43 Y_RNA.629-201ENST00000411368 105 ntBASIC-3.76□□□□□ -3.01
USE1Q9NZ43 Y_RNA.193-201ENST00000363979 102 ntBASIC-3.77□□□□□ -3.01
USE1Q9NZ43 RNU6-974P-201ENST00000384099 108 ntBASIC-3.77□□□□□ -3.01
USE1Q9NZ43 RNU6-230P-201ENST00000362457 104 ntBASIC-3.78□□□□□ -3.01
USE1Q9NZ43 MTATP8P2-201ENST00000435212 202 ntBASIC-3.78□□□□□ -3.01
USE1Q9NZ43 RNU6-971P-201ENST00000516920 106 ntBASIC-3.78□□□□□ -3.01
USE1Q9NZ43 SNORD113-3-201ENST00000364830 72 ntBASIC-3.79□□□□□ -3.02
USE1Q9NZ43 RNA5SP173-201ENST00000364857 136 ntBASIC-3.79□□□□□ -3.02
USE1Q9NZ43 RNU6-520P-201ENST00000384717 104 ntBASIC-3.79□□□□□ -3.02
USE1Q9NZ43 MIR1302-5-201ENST00000408164 150 ntBASIC-3.79□□□□□ -3.02
USE1Q9NZ43 RNU6-633P-201ENST00000362612 103 ntBASIC-3.8□□□□□ -3.02
USE1Q9NZ43 Y_RNA.93-201ENST00000363066 109 ntBASIC-3.8□□□□□ -3.02
USE1Q9NZ43 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.8□□□□□ -3.02
USE1Q9NZ43 Y_RNA.443-201ENST00000384135 111 ntBASIC-3.8□□□□□ -3.02
USE1Q9NZ43 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.8□□□□□ -3.02
USE1Q9NZ43 AC074348.1-201ENST00000426503 132 ntBASIC-3.8□□□□□ -3.02
USE1Q9NZ43 SNORD116-21-201ENST00000384507 92 ntBASIC-3.81□□□□□ -3.02
USE1Q9NZ43 RNU6-172P-201ENST00000411000 93 ntBASIC-3.81□□□□□ -3.02
USE1Q9NZ43 AC093729.1-201ENST00000513074 128 ntBASIC-3.81□□□□□ -3.02
USE1Q9NZ43 MIR202-201ENST00000362219 110 ntBASIC-3.82□□□□□ -3.02
USE1Q9NZ43 RNU6-129P-201ENST00000391022 107 ntBASIC-3.82□□□□□ -3.02
USE1Q9NZ43 RNU6-109P-201ENST00000516364 107 ntBASIC-3.82□□□□□ -3.02
USE1Q9NZ43 RNU6-184P-201ENST00000516514 107 ntBASIC-3.82□□□□□ -3.02
USE1Q9NZ43 RNU6-557P-201ENST00000516842 110 ntBASIC-3.82□□□□□ -3.02
USE1Q9NZ43 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.83□□□□□ -3.02
USE1Q9NZ43 RNU6-668P-201ENST00000364180 107 ntBASIC-3.83□□□□□ -3.02
USE1Q9NZ43 RNU6-649P-201ENST00000384463 107 ntBASIC-3.83□□□□□ -3.02
USE1Q9NZ43 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.83□□□□□ -3.02
USE1Q9NZ43 Y_RNA.139-201ENST00000363464 102 ntBASIC-3.84□□□□□ -3.02
USE1Q9NZ43 Y_RNA.343-201ENST00000365354 112 ntBASIC-3.85□□□□□ -3.03
USE1Q9NZ43 RNU6-659P-201ENST00000516454 104 ntBASIC-3.86□□□□□ -3.03
USE1Q9NZ43 RNU6-834P-201ENST00000362367 110 ntBASIC-3.87□□□□□ -3.03
USE1Q9NZ43 Y_RNA.59-201ENST00000362828 102 ntBASIC-3.87□□□□□ -3.03
USE1Q9NZ43 RNU6-106P-201ENST00000384405 107 ntBASIC-3.87□□□□□ -3.03
USE1Q9NZ43 SNORA17.4-201ENST00000391287 132 ntBASIC-3.87□□□□□ -3.03
USE1Q9NZ43 MIR4503-201ENST00000582187 83 ntBASIC-3.87□□□□□ -3.03
USE1Q9NZ43 Y_RNA.818-201ENST00000618813 71 ntBASIC-3.87□□□□□ -3.03
USE1Q9NZ43 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-3.87□□□□□ -3.03
USE1Q9NZ43 RNU6-686P-201ENST00000364839 107 ntBASIC-3.88□□□□□ -3.03
USE1Q9NZ43 MIR4668-201ENST00000582284 70 ntBASIC-3.88□□□□□ -3.03
USE1Q9NZ43 Y_RNA.812-201ENST00000610788 101 ntBASIC-3.88□□□□□ -3.03
USE1Q9NZ43 Y_RNA.784-201ENST00000613803 101 ntBASIC-3.88□□□□□ -3.03
USE1Q9NZ43 Y_RNA.787-201ENST00000616522 101 ntBASIC-3.88□□□□□ -3.03
USE1Q9NZ43 Y_RNA.780-201ENST00000617336 101 ntBASIC-3.88□□□□□ -3.03
USE1Q9NZ43 Y_RNA.801-201ENST00000619005 101 ntBASIC-3.88□□□□□ -3.03
USE1Q9NZ43 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.89□□□□□ -3.03
USE1Q9NZ43 Y_RNA.290-201ENST00000364879 114 ntBASIC-3.89□□□□□ -3.03
USE1Q9NZ43 AL353621.2-201ENST00000605340 133 ntBASIC-3.89□□□□□ -3.03
USE1Q9NZ43 MIR379-201ENST00000362218 67 ntBASIC-3.91□□□□□ -3.04
USE1Q9NZ43 RNU6-912P-201ENST00000363800 104 ntBASIC-3.91□□□□□ -3.04
USE1Q9NZ43 SNORA63-201ENST00000363450 132 ntBASIC-3.92□□□□□ -3.04
USE1Q9NZ43 RNU6-361P-201ENST00000364454 107 ntBASIC-3.92□□□□□ -3.04
USE1Q9NZ43 MIR8053-201ENST00000613344 75 ntBASIC-3.92□□□□□ -3.04
USE1Q9NZ43 RNU6-797P-201ENST00000363101 109 ntBASIC-3.93□□□□□ -3.04
USE1Q9NZ43 RNU6-1325P-201ENST00000364905 105 ntBASIC-3.93□□□□□ -3.04
USE1Q9NZ43 RNU7-160P-201ENST00000516660 62 ntBASIC-3.93□□□□□ -3.04
USE1Q9NZ43 MIRLET7A1-201ENST00000362295 80 ntBASIC-3.95□□□□□ -3.04
USE1Q9NZ43 SNORD113.1-201ENST00000363280 73 ntBASIC-3.95□□□□□ -3.04
USE1Q9NZ43 RNU6-867P-201ENST00000364956 107 ntBASIC-3.95□□□□□ -3.04
USE1Q9NZ43 RNU6-196P-201ENST00000384315 107 ntBASIC-3.95□□□□□ -3.04
USE1Q9NZ43 Y_RNA.532-201ENST00000384590 113 ntBASIC-3.95□□□□□ -3.04
USE1Q9NZ43 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-3.95□□□□□ -3.04
USE1Q9NZ43 MIR4484-201ENST00000582855 83 ntBASIC-3.95□□□□□ -3.04
USE1Q9NZ43 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.95□□□□□ -3.04
USE1Q9NZ43 SNORA19-201ENST00000384737 128 ntBASIC-3.96□□□□□ -3.04
USE1Q9NZ43 RNU6-828P-201ENST00000364876 107 ntBASIC-3.97□□□□□ -3.04
USE1Q9NZ43 RNU7-200P-201ENST00000516105 62 ntBASIC-3.97□□□□□ -3.04
USE1Q9NZ43 MIR1297-201ENST00000637311 77 ntBASIC-3.97□□□□□ -3.04
USE1Q9NZ43 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.98□□□□□ -3.05
USE1Q9NZ43 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-3.98□□□□□ -3.05
USE1Q9NZ43 RNU6-554P-201ENST00000410466 106 ntBASIC-3.98□□□□□ -3.05
USE1Q9NZ43 Y_RNA.620-201ENST00000411009 88 ntBASIC-3.98□□□□□ -3.05
USE1Q9NZ43 Y_RNA.218-201ENST00000364218 104 ntBASIC-3.99□□□□□ -3.05
USE1Q9NZ43 RNU6-530P-201ENST00000391180 107 ntBASIC-3.99□□□□□ -3.05
USE1Q9NZ43 RNU6-379P-201ENST00000363813 104 ntBASIC-4□□□□□ -3.05
USE1Q9NZ43 MIR548AJ2-201ENST00000408539 92 ntBASIC-4□□□□□ -3.05
USE1Q9NZ43 RNU6-402P-201ENST00000410678 103 ntBASIC-4□□□□□ -3.05
USE1Q9NZ43 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-4□□□□□ -3.05
USE1Q9NZ43 RNU6-68P-201ENST00000516576 104 ntBASIC-4.01□□□□□ -3.05
USE1Q9NZ43 RNU6-388P-201ENST00000517012 105 ntBASIC-4.01□□□□□ -3.05
Retrieved 100 of 98,524 protein–RNA pairs in 219.4 ms