Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.26□□□□□ -2.61
DDX28Q9NUL7 SNORD19-201ENST00000391191 68 ntBASIC-1.26□□□□□ -2.61
DDX28Q9NUL7 RNU6-313P-201ENST00000516317 112 ntBASIC-1.26□□□□□ -2.61
DDX28Q9NUL7 U2.7-201ENST00000619197 100 ntBASIC-1.26□□□□□ -2.61
DDX28Q9NUL7 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.27□□□□□ -2.61
DDX28Q9NUL7 MIR889-201ENST00000401280 79 ntBASIC-1.29□□□□□ -2.62
DDX28Q9NUL7 MIR1207-201ENST00000408249 87 ntBASIC-1.29□□□□□ -2.62
DDX28Q9NUL7 RPL35AP4-201ENST00000412007 102 ntBASIC-1.29□□□□□ -2.62
DDX28Q9NUL7 MIR4668-201ENST00000582284 70 ntBASIC-1.29□□□□□ -2.62
DDX28Q9NUL7 MIR527-201ENST00000385244 85 ntBASIC-1.3□□□□□ -2.62
DDX28Q9NUL7 RNU6-576P-201ENST00000390854 102 ntBASIC-1.3□□□□□ -2.62
DDX28Q9NUL7 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.31□□□□□ -2.62
DDX28Q9NUL7 AC091912.2-201ENST00000624798 167 ntBASIC-1.31□□□□□ -2.62
DDX28Q9NUL7 MIR6874-201ENST00000635894 71 ntBASIC-1.31□□□□□ -2.62
DDX28Q9NUL7 MIR5683-201ENST00000636514 76 ntBASIC-1.31□□□□□ -2.62
DDX28Q9NUL7 MIR365A-201ENST00000362260 87 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 MIR450A1-201ENST00000362262 91 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 RNU6-645P-201ENST00000364649 106 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 SNORD114-3-201ENST00000364969 75 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 MIR548C-201ENST00000384815 97 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 AC093729.1-201ENST00000513074 128 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.32□□□□□ -2.62
DDX28Q9NUL7 RNU6-330P-201ENST00000363015 107 ntBASIC-1.33□□□□□ -2.62
DDX28Q9NUL7 RNU6-624P-201ENST00000363411 107 ntBASIC-1.33□□□□□ -2.62
DDX28Q9NUL7 SNORD116-22-201ENST00000384430 92 ntBASIC-1.33□□□□□ -2.62
DDX28Q9NUL7 SNORA40.13-201ENST00000516379 120 ntBASIC-1.33□□□□□ -2.62
DDX28Q9NUL7 RNU6-807P-201ENST00000516805 107 ntBASIC-1.33□□□□□ -2.62
DDX28Q9NUL7 MIR3910-1-201ENST00000580936 111 ntBASIC-1.33□□□□□ -2.62
DDX28Q9NUL7 RNU6-478P-201ENST00000363904 110 ntBASIC-1.34□□□□□ -2.62
DDX28Q9NUL7 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.34□□□□□ -2.62
DDX28Q9NUL7 AP001318.4-201ENST00000616637 121 ntBASIC-1.34□□□□□ -2.62
DDX28Q9NUL7 RNY4P18-201ENST00000391107 89 ntBASIC-1.35□□□□□ -2.63
DDX28Q9NUL7 RNA5SP180-201ENST00000516181 101 ntBASIC-1.35□□□□□ -2.63
DDX28Q9NUL7 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.35□□□□□ -2.63
DDX28Q9NUL7 MIR1285-2-201ENST00000408311 88 ntBASIC-1.36□□□□□ -2.63
DDX28Q9NUL7 RNU6-706P-201ENST00000517229 104 ntBASIC-1.36□□□□□ -2.63
DDX28Q9NUL7 MIR4490-201ENST00000582647 84 ntBASIC-1.36□□□□□ -2.63
DDX28Q9NUL7 RNU6-164P-201ENST00000364604 103 ntBASIC-1.37□□□□□ -2.63
DDX28Q9NUL7 MIR548Q-201ENST00000408404 100 ntBASIC-1.37□□□□□ -2.63
DDX28Q9NUL7 AC090616.4-201ENST00000448026 115 ntBASIC-1.37□□□□□ -2.63
DDX28Q9NUL7 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.38□□□□□ -2.63
DDX28Q9NUL7 RNU6-458P-201ENST00000384179 107 ntBASIC-1.38□□□□□ -2.63
DDX28Q9NUL7 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.38□□□□□ -2.63
DDX28Q9NUL7 RNU6-982P-201ENST00000516216 102 ntBASIC-1.38□□□□□ -2.63
DDX28Q9NUL7 MIR4441-201ENST00000582623 100 ntBASIC-1.38□□□□□ -2.63
DDX28Q9NUL7 U6.58-201ENST00000613107 107 ntBASIC-1.38□□□□□ -2.63
DDX28Q9NUL7 MALAT1.1-201ENST00000618249 95 ntBASIC-1.38□□□□□ -2.63
DDX28Q9NUL7 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.39□□□□□ -2.63
DDX28Q9NUL7 RNU6-604P-201ENST00000390917 100 ntBASIC-1.39□□□□□ -2.63
DDX28Q9NUL7 RNU7-174P-201ENST00000516248 59 ntBASIC-1.39□□□□□ -2.63
DDX28Q9NUL7 MIR4520-1-201ENST00000582609 70 ntBASIC-1.39□□□□□ -2.63
DDX28Q9NUL7 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.4□□□□□ -2.63
DDX28Q9NUL7 RNU6-557P-201ENST00000516842 110 ntBASIC-1.4□□□□□ -2.63
DDX28Q9NUL7 AC138207.3-201ENST00000585289 166 ntBASIC-1.4□□□□□ -2.63
DDX28Q9NUL7 RNU6-755P-201ENST00000364400 103 ntBASIC-1.41□□□□□ -2.64
DDX28Q9NUL7 RNU6-219P-201ENST00000364728 107 ntBASIC-1.41□□□□□ -2.64
DDX28Q9NUL7 SNORD113-1-201ENST00000365321 69 ntBASIC-1.41□□□□□ -2.64
DDX28Q9NUL7 SNORA8.1-201ENST00000384250 140 ntBASIC-1.41□□□□□ -2.64
DDX28Q9NUL7 RNU6-303P-201ENST00000517091 106 ntBASIC-1.41□□□□□ -2.64
DDX28Q9NUL7 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.42□□□□□ -2.64
DDX28Q9NUL7 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.42□□□□□ -2.64
DDX28Q9NUL7 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.42□□□□□ -2.64
DDX28Q9NUL7 RNU6-267P-201ENST00000516714 103 ntBASIC-1.42□□□□□ -2.64
DDX28Q9NUL7 MIR3675-201ENST00000583661 73 ntBASIC-1.42□□□□□ -2.64
DDX28Q9NUL7 MIR6502-201ENST00000617296 76 ntBASIC-1.42□□□□□ -2.64
DDX28Q9NUL7 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.43□□□□□ -2.64
DDX28Q9NUL7 RNU6-497P-201ENST00000365316 104 ntBASIC-1.43□□□□□ -2.64
DDX28Q9NUL7 RNU6-402P-201ENST00000410678 103 ntBASIC-1.43□□□□□ -2.64
DDX28Q9NUL7 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.43□□□□□ -2.64
DDX28Q9NUL7 RNU6-168P-201ENST00000516189 101 ntBASIC-1.43□□□□□ -2.64
DDX28Q9NUL7 U4.4-201ENST00000620626 117 ntBASIC-1.43□□□□□ -2.64
DDX28Q9NUL7 MIR520D-201ENST00000385002 87 ntBASIC-1.44□□□□□ -2.64
DDX28Q9NUL7 HLA-S-202ENST00000425174 53 ntBASIC-1.44□□□□□ -2.64
DDX28Q9NUL7 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.44□□□□□ -2.64
DDX28Q9NUL7 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.44□□□□□ -2.64
DDX28Q9NUL7 MIR548BB-201ENST00000626714 66 ntBASIC-1.44□□□□□ -2.64
DDX28Q9NUL7 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.45□□□□□ -2.64
DDX28Q9NUL7 RNU6-598P-201ENST00000364017 105 ntBASIC-1.45□□□□□ -2.64
DDX28Q9NUL7 RNU6-696P-201ENST00000390834 107 ntBASIC-1.45□□□□□ -2.64
DDX28Q9NUL7 RNU6-630P-201ENST00000391258 106 ntBASIC-1.45□□□□□ -2.64
DDX28Q9NUL7 RNU6-587P-201ENST00000391282 106 ntBASIC-1.45□□□□□ -2.64
DDX28Q9NUL7 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.45□□□□□ -2.64
DDX28Q9NUL7 MIR5591-201ENST00000578248 65 ntBASIC-1.45□□□□□ -2.64
DDX28Q9NUL7 RNU6-686P-201ENST00000364839 107 ntBASIC-1.46□□□□□ -2.64
DDX28Q9NUL7 RNU6-608P-201ENST00000383927 104 ntBASIC-1.46□□□□□ -2.64
DDX28Q9NUL7 AC074348.1-201ENST00000426503 132 ntBASIC-1.46□□□□□ -2.64
DDX28Q9NUL7 U2.18-201ENST00000622185 84 ntBASIC-1.46□□□□□ -2.64
DDX28Q9NUL7 SNORD45.1-201ENST00000363181 77 ntBASIC-1.47□□□□□ -2.64
DDX28Q9NUL7 RNU6-32P-201ENST00000383948 107 ntBASIC-1.47□□□□□ -2.64
DDX28Q9NUL7 RNU6-13P-201ENST00000384248 107 ntBASIC-1.47□□□□□ -2.64
DDX28Q9NUL7 RNU6-12P-201ENST00000384604 107 ntBASIC-1.47□□□□□ -2.64
DDX28Q9NUL7 RNU6-41P-201ENST00000384741 107 ntBASIC-1.47□□□□□ -2.64
DDX28Q9NUL7 MIR4484-201ENST00000582855 83 ntBASIC-1.47□□□□□ -2.64
DDX28Q9NUL7 MIR548V-201ENST00000584165 80 ntBASIC-1.48□□□□□ -2.65
DDX28Q9NUL7 MIR429-201ENST00000362106 83 ntBASIC-1.49□□□□□ -2.65
DDX28Q9NUL7 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 RNU6-698P-201ENST00000363523 107 ntBASIC-1.5□□□□□ -2.65
DDX28Q9NUL7 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.5□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms