Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-959P-201ENST00000384671 107 ntBASIC-1.39□□□□□ -2.63
FOXA1P55317 MIR4668-201ENST00000582284 70 ntBASIC-1.39□□□□□ -2.63
FOXA1P55317 MIR6129-201ENST00000616087 109 ntBASIC-1.39□□□□□ -2.63
FOXA1P55317 RNU6-624P-201ENST00000363411 107 ntBASIC-1.4□□□□□ -2.63
FOXA1P55317 RNU6-164P-201ENST00000364604 103 ntBASIC-1.4□□□□□ -2.63
FOXA1P55317 AC008267.6-201ENST00000441664 139 ntBASIC-1.4□□□□□ -2.63
FOXA1P55317 RNU6-158P-201ENST00000517104 100 ntBASIC-1.4□□□□□ -2.63
FOXA1P55317 MIR4770-201ENST00000579149 58 ntBASIC-1.4□□□□□ -2.63
FOXA1P55317 MIR889-201ENST00000401280 79 ntBASIC-1.41□□□□□ -2.64
FOXA1P55317 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.41□□□□□ -2.64
FOXA1P55317 RPL35AP4-201ENST00000412007 102 ntBASIC-1.41□□□□□ -2.64
FOXA1P55317 AC091912.2-201ENST00000624798 167 ntBASIC-1.41□□□□□ -2.64
FOXA1P55317 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.41□□□□□ -2.64
FOXA1P55317 RNU6-478P-201ENST00000363904 110 ntBASIC-1.42□□□□□ -2.64
FOXA1P55317 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.42□□□□□ -2.64
FOXA1P55317 AL078595.1-201ENST00000404458 226 ntBASIC-1.42□□□□□ -2.64
FOXA1P55317 MIR548Q-201ENST00000408404 100 ntBASIC-1.42□□□□□ -2.64
FOXA1P55317 AC093729.1-201ENST00000513074 128 ntBASIC-1.42□□□□□ -2.64
FOXA1P55317 RNU6-330P-201ENST00000363015 107 ntBASIC-1.43□□□□□ -2.64
FOXA1P55317 RNU6-458P-201ENST00000384179 107 ntBASIC-1.43□□□□□ -2.64
FOXA1P55317 RNU7-174P-201ENST00000516248 59 ntBASIC-1.43□□□□□ -2.64
FOXA1P55317 RNU6-589P-201ENST00000516485 107 ntBASIC-1.43□□□□□ -2.64
FOXA1P55317 MIR3675-201ENST00000583661 73 ntBASIC-1.43□□□□□ -2.64
FOXA1P55317 U6.58-201ENST00000613107 107 ntBASIC-1.43□□□□□ -2.64
FOXA1P55317 MIR6874-201ENST00000635894 71 ntBASIC-1.43□□□□□ -2.64
FOXA1P55317 snosnR66.1-201ENST00000391095 99 ntBASIC-1.44□□□□□ -2.64
FOXA1P55317 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.44□□□□□ -2.64
FOXA1P55317 MIR4520-1-201ENST00000582609 70 ntBASIC-1.44□□□□□ -2.64
FOXA1P55317 AL365222.1-201ENST00000614661 98 ntBASIC-1.44□□□□□ -2.64
FOXA1P55317 MIR2052-201ENST00000636055 55 ntBASIC-1.44□□□□□ -2.64
FOXA1P55317 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.45□□□□□ -2.64
FOXA1P55317 RNU6-209P-201ENST00000384118 107 ntBASIC-1.45□□□□□ -2.64
FOXA1P55317 SNORA8.1-201ENST00000384250 140 ntBASIC-1.45□□□□□ -2.64
FOXA1P55317 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.45□□□□□ -2.64
FOXA1P55317 AC090616.4-201ENST00000448026 115 ntBASIC-1.45□□□□□ -2.64
FOXA1P55317 RNU6-303P-201ENST00000517091 106 ntBASIC-1.45□□□□□ -2.64
FOXA1P55317 MIR6502-201ENST00000617296 76 ntBASIC-1.45□□□□□ -2.64
FOXA1P55317 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.46□□□□□ -2.64
FOXA1P55317 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.46□□□□□ -2.64
FOXA1P55317 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.46□□□□□ -2.64
FOXA1P55317 RNU6-557P-201ENST00000516842 110 ntBASIC-1.46□□□□□ -2.64
FOXA1P55317 SNORD116-22-201ENST00000384430 92 ntBASIC-1.47□□□□□ -2.64
FOXA1P55317 RNU6-696P-201ENST00000390834 107 ntBASIC-1.47□□□□□ -2.64
FOXA1P55317 RNU6-604P-201ENST00000390917 100 ntBASIC-1.47□□□□□ -2.64
FOXA1P55317 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.47□□□□□ -2.64
FOXA1P55317 RNU6-982P-201ENST00000516216 102 ntBASIC-1.48□□□□□ -2.65
FOXA1P55317 MIR1246-201ENST00000636535 73 ntBASIC-1.48□□□□□ -2.65
FOXA1P55317 RNU6-834P-201ENST00000362367 110 ntBASIC-1.49□□□□□ -2.65
FOXA1P55317 RNU6-219P-201ENST00000364728 107 ntBASIC-1.49□□□□□ -2.65
FOXA1P55317 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.49□□□□□ -2.65
FOXA1P55317 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.49□□□□□ -2.65
FOXA1P55317 RNU6-587P-201ENST00000391282 106 ntBASIC-1.49□□□□□ -2.65
FOXA1P55317 AC074348.1-201ENST00000426503 132 ntBASIC-1.49□□□□□ -2.65
FOXA1P55317 AL031737.1-201ENST00000450125 223 ntBASIC-1.49□□□□□ -2.65
FOXA1P55317 MIR429-201ENST00000362106 83 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 SNORD45.1-201ENST00000363181 77 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 RNU6-686P-201ENST00000364839 107 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 RNU6-81P-201ENST00000365608 104 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 RNU6-168P-201ENST00000516189 101 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 RNU6-267P-201ENST00000516714 103 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 MIR548BB-201ENST00000626714 66 ntBASIC-1.5□□□□□ -2.65
FOXA1P55317 MIR450A1-201ENST00000362262 91 ntBASIC-1.51□□□□□ -2.65
FOXA1P55317 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.51□□□□□ -2.65
FOXA1P55317 RNU6-497P-201ENST00000365316 104 ntBASIC-1.51□□□□□ -2.65
FOXA1P55317 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.51□□□□□ -2.65
FOXA1P55317 RNU6-402P-201ENST00000410678 103 ntBASIC-1.51□□□□□ -2.65
FOXA1P55317 RNU6-698P-201ENST00000363523 107 ntBASIC-1.52□□□□□ -2.65
FOXA1P55317 RNU6-34P-201ENST00000364874 107 ntBASIC-1.52□□□□□ -2.65
FOXA1P55317 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.52□□□□□ -2.65
FOXA1P55317 AC018880.2-201ENST00000414265 201 ntBASIC-1.52□□□□□ -2.65
FOXA1P55317 MALAT1.1-201ENST00000618249 95 ntBASIC-1.52□□□□□ -2.65
FOXA1P55317 RNY4P27-201ENST00000363341 96 ntBASIC-1.53□□□□□ -2.65
FOXA1P55317 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.53□□□□□ -2.65
FOXA1P55317 RNU6-630P-201ENST00000391258 106 ntBASIC-1.53□□□□□ -2.65
FOXA1P55317 U4.4-201ENST00000620626 117 ntBASIC-1.53□□□□□ -2.65
FOXA1P55317 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.54□□□□□ -2.66
FOXA1P55317 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.54□□□□□ -2.66
FOXA1P55317 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.54□□□□□ -2.66
FOXA1P55317 SNORA40.13-201ENST00000516379 120 ntBASIC-1.54□□□□□ -2.66
FOXA1P55317 AP001318.4-201ENST00000616637 121 ntBASIC-1.54□□□□□ -2.66
FOXA1P55317 RNU6-598P-201ENST00000364017 105 ntBASIC-1.55□□□□□ -2.66
FOXA1P55317 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.55□□□□□ -2.66
FOXA1P55317 RNU6-540P-201ENST00000384622 101 ntBASIC-1.55□□□□□ -2.66
FOXA1P55317 RNU6-129P-201ENST00000391022 107 ntBASIC-1.55□□□□□ -2.66
FOXA1P55317 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.55□□□□□ -2.66
FOXA1P55317 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.56□□□□□ -2.66
FOXA1P55317 RNU6-608P-201ENST00000383927 104 ntBASIC-1.56□□□□□ -2.66
FOXA1P55317 RNA5SP86-201ENST00000390869 98 ntBASIC-1.56□□□□□ -2.66
FOXA1P55317 MIR4484-201ENST00000582855 83 ntBASIC-1.56□□□□□ -2.66
FOXA1P55317 MIR548V-201ENST00000584165 80 ntBASIC-1.56□□□□□ -2.66
FOXA1P55317 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.57□□□□□ -2.66
FOXA1P55317 RNU6-22P-201ENST00000384355 107 ntBASIC-1.57□□□□□ -2.66
FOXA1P55317 MTND4LP1-201ENST00000446263 157 ntBASIC-1.57□□□□□ -2.66
FOXA1P55317 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.58□□□□□ -2.66
FOXA1P55317 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.58□□□□□ -2.66
FOXA1P55317 MIR520D-201ENST00000385002 87 ntBASIC-1.58□□□□□ -2.66
FOXA1P55317 RNU6-400P-201ENST00000391173 106 ntBASIC-1.58□□□□□ -2.66
FOXA1P55317 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.58□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 209.5 ms