Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR1297-201ENST00000637311 77 ntBASIC-0.27□□□□□ -2.45
HOXA1P49639 RNU6-228P-201ENST00000362700 106 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 SNORD75.1-201ENST00000408373 60 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 MIR3134-201ENST00000579433 74 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 MIR4802-201ENST00000581881 80 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 MIR4263-201ENST00000584745 83 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 MIR548AZ-201ENST00000616567 95 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 U4.4-201ENST00000620626 117 ntBASIC-0.28□□□□□ -2.45
HOXA1P49639 SNORD114-25-201ENST00000363742 72 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 SNORD115-31-201ENST00000365318 82 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 RNU6-431P-201ENST00000383874 107 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.29□□□□□ -2.46
HOXA1P49639 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 RNU7-88P-201ENST00000458752 63 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 RNU7-134P-201ENST00000458997 64 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 MIR5589-201ENST00000579442 60 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 snoR1.1-201ENST00000628177 80 ntBASIC-0.29□□□□□ -2.46
HOXA1P49639 SNORD114-17-201ENST00000364699 75 ntBASIC-0.3□□□□□ -2.46
HOXA1P49639 SNORD116-24-201ENST00000384549 92 ntBASIC-0.3□□□□□ -2.46
HOXA1P49639 MIR1255A-201ENST00000408338 113 ntBASIC-0.3□□□□□ -2.46
HOXA1P49639 RNA5SP225-201ENST00000410874 135 ntBASIC-0.3□□□□□ -2.46
HOXA1P49639 RNU7-174P-201ENST00000516248 59 ntBASIC-0.3□□□□□ -2.46
HOXA1P49639 MIR4645-201ENST00000583158 77 ntBASIC-0.3□□□□□ -2.46
HOXA1P49639 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.3□□□□□ -2.46
HOXA1P49639 SNORA32.3-201ENST00000384772 121 ntBASIC-0.31□□□□□ -2.46
HOXA1P49639 MIR548C-201ENST00000384815 97 ntBASIC-0.31□□□□□ -2.46
HOXA1P49639 MIR518B-201ENST00000385127 83 ntBASIC-0.31□□□□□ -2.46
HOXA1P49639 MIR889-201ENST00000401280 79 ntBASIC-0.31□□□□□ -2.46
HOXA1P49639 MIR4636-201ENST00000582271 80 ntBASIC-0.31□□□□□ -2.46
HOXA1P49639 AC108676.2-201ENST00000605225 163 ntBASIC-0.31□□□□□ -2.46
HOXA1P49639 SNORD114-14-201ENST00000362723 75 ntBASIC-0.32□□□□□ -2.46
HOXA1P49639 MIR204-201ENST00000385200 110 ntBASIC-0.32□□□□□ -2.46
HOXA1P49639 SNORD64-201ENST00000386683 67 ntBASIC-0.32□□□□□ -2.46
HOXA1P49639 U7.5-201ENST00000517224 61 ntBASIC-0.32□□□□□ -2.46
HOXA1P49639 MIR3681-201ENST00000580089 72 ntBASIC-0.32□□□□□ -2.46
HOXA1P49639 MIR548V-201ENST00000584165 80 ntBASIC-0.32□□□□□ -2.46
HOXA1P49639 MIR3202-2-201ENST00000635980 79 ntBASIC-0.32□□□□□ -2.46
HOXA1P49639 SNORD113.1-201ENST00000363280 73 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 SNORD114-28-201ENST00000363610 72 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 MIR630-201ENST00000384957 97 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 SNORD19-201ENST00000391191 68 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 MIR1302-4-201ENST00000408701 150 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 SNORD18.2-201ENST00000459604 70 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 SNORD63.1-201ENST00000516178 80 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 RNU7-154P-201ENST00000516194 62 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 RNU6-70P-201ENST00000516438 60 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 RNU6-1015P-201ENST00000517121 99 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 AP001180.6-201ENST00000584918 159 ntBASIC-0.33□□□□□ -2.46
HOXA1P49639 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 SNORA41B-201ENST00000384785 128 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 RNU6-523P-201ENST00000516304 54 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 U2.18-201ENST00000622185 84 ntBASIC-0.34□□□□□ -2.46
HOXA1P49639 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.35□□□□□ -2.47
HOXA1P49639 RNU6-35P-201ENST00000384530 107 ntBASIC-0.35□□□□□ -2.47
HOXA1P49639 MIR520D-201ENST00000385002 87 ntBASIC-0.35□□□□□ -2.47
HOXA1P49639 RNU6-587P-201ENST00000391282 106 ntBASIC-0.35□□□□□ -2.47
HOXA1P49639 RNU6-687P-201ENST00000516443 89 ntBASIC-0.35□□□□□ -2.47
HOXA1P49639 RNU6-598P-201ENST00000364017 105 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 RNU6-458P-201ENST00000384179 107 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 AL021921.1-201ENST00000442774 93 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 RNU6-732P-201ENST00000516033 103 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 U6.58-201ENST00000613107 107 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 MIR382-201ENST00000637119 76 ntBASIC-0.36□□□□□ -2.47
HOXA1P49639 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 SNORA62.4-201ENST00000365504 151 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 MIR147A-201ENST00000385079 72 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 MIR196A1-201ENST00000388006 70 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 SNORD78.1-201ENST00000390866 65 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 SNORD113-2-201ENST00000391082 72 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 RPL35AP4-201ENST00000412007 102 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.37□□□□□ -2.47
HOXA1P49639 SNORD1B-201ENST00000363091 84 ntBASIC-0.38□□□□□ -2.47
HOXA1P49639 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.38□□□□□ -2.47
HOXA1P49639 MIR1265-201ENST00000408444 86 ntBASIC-0.38□□□□□ -2.47
HOXA1P49639 RNU6-857P-201ENST00000515893 110 ntBASIC-0.38□□□□□ -2.47
HOXA1P49639 RNA5SP470-201ENST00000516463 106 ntBASIC-0.38□□□□□ -2.47
HOXA1P49639 MIR4493-201ENST00000584016 73 ntBASIC-0.38□□□□□ -2.47
HOXA1P49639 MIR101-1-201ENST00000362265 75 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 RNA5SP26-201ENST00000362406 119 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 RNU6-698P-201ENST00000363523 107 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 RNU6-34P-201ENST00000364874 107 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 RNU6-540P-201ENST00000384622 101 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 RNU6-258P-201ENST00000390884 101 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 AC021146.6-201ENST00000514659 117 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 RNA5SP395-201ENST00000516567 118 ntBASIC-0.39□□□□□ -2.47
HOXA1P49639 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.4□□□□□ -2.47
HOXA1P49639 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.4□□□□□ -2.47
HOXA1P49639 SNORD74.6-201ENST00000364796 70 ntBASIC-0.4□□□□□ -2.47
HOXA1P49639 MIR154-201ENST00000385243 84 ntBASIC-0.4□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 177.2 ms