Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL445584.3-201ENST00000617173 78 ntBASIC-0.98□□□□□ -2.57
LIM2P55344 SNORD115-27-201ENST00000364430 82 ntBASIC-0.99□□□□□ -2.57
LIM2P55344 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.99□□□□□ -2.57
LIM2P55344 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.99□□□□□ -2.57
LIM2P55344 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.99□□□□□ -2.57
LIM2P55344 SNORD77.2-201ENST00000391045 68 ntBASIC-0.99□□□□□ -2.57
LIM2P55344 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.99□□□□□ -2.57
LIM2P55344 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.99□□□□□ -2.57
LIM2P55344 MIR6888-201ENST00000621977 67 ntBASIC-0.99□□□□□ -2.57
LIM2P55344 RNU6-633P-201ENST00000362612 103 ntBASIC-1□□□□□ -2.57
LIM2P55344 RNY1P7-201ENST00000384743 110 ntBASIC-1□□□□□ -2.57
LIM2P55344 MIR147A-201ENST00000385079 72 ntBASIC-1□□□□□ -2.57
LIM2P55344 AL031737.1-201ENST00000450125 223 ntBASIC-1□□□□□ -2.57
LIM2P55344 SNORD114-25-201ENST00000363742 72 ntBASIC-1.01□□□□□ -2.57
LIM2P55344 SNORD57-201ENST00000448188 72 ntBASIC-1.01□□□□□ -2.57
LIM2P55344 RNU7-154P-201ENST00000516194 62 ntBASIC-1.01□□□□□ -2.57
LIM2P55344 RNU6-313P-201ENST00000516317 112 ntBASIC-1.01□□□□□ -2.57
LIM2P55344 SNORD115-37-201ENST00000363768 82 ntBASIC-1.02□□□□□ -2.57
LIM2P55344 MIR196A1-201ENST00000388006 70 ntBASIC-1.02□□□□□ -2.57
LIM2P55344 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.02□□□□□ -2.57
LIM2P55344 AC132825.6-201ENST00000638861 357 ntBASIC-1.02□□□□□ -2.57
LIM2P55344 MIR409-201ENST00000362237 79 ntBASIC-1.03□□□□□ -2.57
LIM2P55344 RNU6-924P-201ENST00000362926 108 ntBASIC-1.03□□□□□ -2.57
LIM2P55344 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.03□□□□□ -2.57
LIM2P55344 RNU6-431P-201ENST00000383874 107 ntBASIC-1.03□□□□□ -2.57
LIM2P55344 RNY1P9-201ENST00000532431 109 ntBASIC-1.03□□□□□ -2.57
LIM2P55344 MIR4668-201ENST00000582284 70 ntBASIC-1.03□□□□□ -2.57
LIM2P55344 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.03□□□□□ -2.57
LIM2P55344 RNU6-624P-201ENST00000363411 107 ntBASIC-1.04□□□□□ -2.58
LIM2P55344 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.04□□□□□ -2.58
LIM2P55344 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.05□□□□□ -2.58
LIM2P55344 SNORD114-17-201ENST00000364699 75 ntBASIC-1.05□□□□□ -2.58
LIM2P55344 SNORD64-201ENST00000386683 67 ntBASIC-1.05□□□□□ -2.58
LIM2P55344 AC093729.1-201ENST00000513074 128 ntBASIC-1.05□□□□□ -2.58
LIM2P55344 MIR3910-1-201ENST00000580936 111 ntBASIC-1.05□□□□□ -2.58
LIM2P55344 RNY4P18-201ENST00000391107 89 ntBASIC-1.06□□□□□ -2.58
LIM2P55344 RNU2-51P-201ENST00000410708 197 ntBASIC-1.06□□□□□ -2.58
LIM2P55344 AL035461.1-201ENST00000421490 332 ntBASIC-1.06□□□□□ -2.58
LIM2P55344 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.06□□□□□ -2.58
LIM2P55344 SNORD113-1-201ENST00000365321 69 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 SNORD116-22-201ENST00000384430 92 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 MIR519A2-201ENST00000384990 87 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 AL021921.1-201ENST00000442774 93 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 SNORA40.13-201ENST00000516379 120 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 AP001318.4-201ENST00000616637 121 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 AL627230.5-201ENST00000619807 58 ntBASIC-1.07□□□□□ -2.58
LIM2P55344 MIR450A1-201ENST00000362262 91 ntBASIC-1.08□□□□□ -2.58
LIM2P55344 SNORD83B-201ENST00000386745 93 ntBASIC-1.08□□□□□ -2.58
LIM2P55344 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.08□□□□□ -2.58
LIM2P55344 RNU6-755P-201ENST00000364400 103 ntBASIC-1.09□□□□□ -2.58
LIM2P55344 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.09□□□□□ -2.58
LIM2P55344 RNU6-518P-201ENST00000516056 96 ntBASIC-1.09□□□□□ -2.58
LIM2P55344 MALAT1.1-201ENST00000618249 95 ntBASIC-1.09□□□□□ -2.58
LIM2P55344 MIR382-201ENST00000637119 76 ntBASIC-1.09□□□□□ -2.58
LIM2P55344 RNU6-497P-201ENST00000365316 104 ntBASIC-1.1□□□□□ -2.59
LIM2P55344 AL500527.2-201ENST00000454105 95 ntBASIC-1.1□□□□□ -2.59
LIM2P55344 RNU6-656P-201ENST00000516785 107 ntBASIC-1.1□□□□□ -2.59
LIM2P55344 RNU6-557P-201ENST00000516842 110 ntBASIC-1.1□□□□□ -2.59
LIM2P55344 AC140658.3-201ENST00000567603 271 ntBASIC-1.1□□□□□ -2.59
LIM2P55344 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.11□□□□□ -2.59
LIM2P55344 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.11□□□□□ -2.59
LIM2P55344 SNORD115-33-201ENST00000363723 82 ntBASIC-1.12□□□□□ -2.59
LIM2P55344 RNU6-219P-201ENST00000364728 107 ntBASIC-1.12□□□□□ -2.59
LIM2P55344 RNA5SP266-201ENST00000410273 108 ntBASIC-1.12□□□□□ -2.59
LIM2P55344 SNORA26.4-201ENST00000391188 123 ntBASIC-1.13□□□□□ -2.59
LIM2P55344 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.13□□□□□ -2.59
LIM2P55344 snoU83B.1-201ENST00000517136 88 ntBASIC-1.13□□□□□ -2.59
LIM2P55344 MIR587-201ENST00000384845 96 ntBASIC-1.14□□□□□ -2.59
LIM2P55344 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.14□□□□□ -2.59
LIM2P55344 SCARNA18B-201ENST00000458806 135 ntBASIC-1.14□□□□□ -2.59
LIM2P55344 RNU6-807P-201ENST00000516805 107 ntBASIC-1.14□□□□□ -2.59
LIM2P55344 RNU6-303P-201ENST00000517091 106 ntBASIC-1.14□□□□□ -2.59
LIM2P55344 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.14□□□□□ -2.59
LIM2P55344 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.15□□□□□ -2.59
LIM2P55344 RNU6-402P-201ENST00000410678 103 ntBASIC-1.15□□□□□ -2.59
LIM2P55344 SCARNA17-201ENST00000516183 144 ntBASIC-1.15□□□□□ -2.59
LIM2P55344 MIR4499-201ENST00000584834 69 ntBASIC-1.15□□□□□ -2.59
LIM2P55344 uc_338.19-201ENST00000616808 99 ntBASIC-1.15□□□□□ -2.59
LIM2P55344 U2.7-201ENST00000619197 100 ntBASIC-1.15□□□□□ -2.59
LIM2P55344 MIR6738-201ENST00000619620 64 ntBASIC-1.15□□□□□ -2.59
LIM2P55344 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.16□□□□□ -2.6
LIM2P55344 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.16□□□□□ -2.6
LIM2P55344 MIR548BB-201ENST00000626714 66 ntBASIC-1.16□□□□□ -2.6
LIM2P55344 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.17□□□□□ -2.6
LIM2P55344 RNU6-645P-201ENST00000364649 106 ntBASIC-1.17□□□□□ -2.6
LIM2P55344 RNU6-686P-201ENST00000364839 107 ntBASIC-1.17□□□□□ -2.6
LIM2P55344 RNA5SP331-201ENST00000364986 107 ntBASIC-1.17□□□□□ -2.6
LIM2P55344 SNORD63.1-201ENST00000516178 80 ntBASIC-1.17□□□□□ -2.6
LIM2P55344 MIR3675-201ENST00000583661 73 ntBASIC-1.17□□□□□ -2.6
LIM2P55344 RNU6-32P-201ENST00000383948 107 ntBASIC-1.18□□□□□ -2.6
LIM2P55344 RNU6-10P-201ENST00000384036 107 ntBASIC-1.18□□□□□ -2.6
LIM2P55344 RNU6-13P-201ENST00000384248 107 ntBASIC-1.18□□□□□ -2.6
LIM2P55344 RNU6-12P-201ENST00000384604 107 ntBASIC-1.18□□□□□ -2.6
LIM2P55344 RNU6-41P-201ENST00000384741 107 ntBASIC-1.18□□□□□ -2.6
LIM2P55344 AC074348.1-201ENST00000426503 132 ntBASIC-1.18□□□□□ -2.6
LIM2P55344 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.19□□□□□ -2.6
LIM2P55344 RNU6-267P-201ENST00000516714 103 ntBASIC-1.19□□□□□ -2.6
LIM2P55344 MIR4324-201ENST00000584846 72 ntBASIC-1.19□□□□□ -2.6
LIM2P55344 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.2□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms