Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC132825.6-201ENST00000638861 357 ntBASIC-1.02□□□□□ -2.57
SDC1P18827 SNORD77.2-201ENST00000391045 68 ntBASIC-1.03□□□□□ -2.57
SDC1P18827 MIR4668-201ENST00000582284 70 ntBASIC-1.03□□□□□ -2.57
SDC1P18827 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.03□□□□□ -2.57
SDC1P18827 AL445584.3-201ENST00000617173 78 ntBASIC-1.03□□□□□ -2.57
SDC1P18827 MIR6888-201ENST00000621977 67 ntBASIC-1.03□□□□□ -2.57
SDC1P18827 RNU6-633P-201ENST00000362612 103 ntBASIC-1.04□□□□□ -2.58
SDC1P18827 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.04□□□□□ -2.58
SDC1P18827 SNORD114-15-201ENST00000364687 72 ntBASIC-1.04□□□□□ -2.58
SDC1P18827 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.04□□□□□ -2.58
SDC1P18827 MIR6739-201ENST00000622461 75 ntBASIC-1.04□□□□□ -2.58
SDC1P18827 SNORD114-25-201ENST00000363742 72 ntBASIC-1.05□□□□□ -2.58
SDC1P18827 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.05□□□□□ -2.58
SDC1P18827 RNY4P18-201ENST00000391107 89 ntBASIC-1.05□□□□□ -2.58
SDC1P18827 RNU2-51P-201ENST00000410708 197 ntBASIC-1.05□□□□□ -2.58
SDC1P18827 RNU6-681P-201ENST00000364012 104 ntBASIC-1.06□□□□□ -2.58
SDC1P18827 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.06□□□□□ -2.58
SDC1P18827 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.06□□□□□ -2.58
SDC1P18827 SNORD115-37-201ENST00000363768 82 ntBASIC-1.07□□□□□ -2.58
SDC1P18827 MIR548AX-201ENST00000580117 73 ntBASIC-1.07□□□□□ -2.58
SDC1P18827 AP001318.4-201ENST00000616637 121 ntBASIC-1.07□□□□□ -2.58
SDC1P18827 SNORD114-17-201ENST00000364699 75 ntBASIC-1.08□□□□□ -2.58
SDC1P18827 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.08□□□□□ -2.58
SDC1P18827 AL035461.1-201ENST00000421490 332 ntBASIC-1.08□□□□□ -2.58
SDC1P18827 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.08□□□□□ -2.58
SDC1P18827 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.09□□□□□ -2.58
SDC1P18827 SNORD113-1-201ENST00000365321 69 ntBASIC-1.09□□□□□ -2.58
SDC1P18827 snoU13.19-201ENST00000459148 104 ntBASIC-1.09□□□□□ -2.58
SDC1P18827 MALAT1.1-201ENST00000618249 95 ntBASIC-1.09□□□□□ -2.58
SDC1P18827 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.09□□□□□ -2.58
SDC1P18827 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 RNU6-431P-201ENST00000383874 107 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 RNU6-30P-201ENST00000384561 107 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 MIR147A-201ENST00000385079 72 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 AL500527.2-201ENST00000454105 95 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 RNU7-154P-201ENST00000516194 62 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 SNORA40.13-201ENST00000516379 120 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.1□□□□□ -2.59
SDC1P18827 AC093729.1-201ENST00000513074 128 ntBASIC-1.11□□□□□ -2.59
SDC1P18827 RNA5SP476-201ENST00000516613 103 ntBASIC-1.11□□□□□ -2.59
SDC1P18827 RNU6-624P-201ENST00000363411 107 ntBASIC-1.12□□□□□ -2.59
SDC1P18827 RNU6-219P-201ENST00000364728 107 ntBASIC-1.12□□□□□ -2.59
SDC1P18827 SNORD116-22-201ENST00000384430 92 ntBASIC-1.12□□□□□ -2.59
SDC1P18827 MIR519A2-201ENST00000384990 87 ntBASIC-1.12□□□□□ -2.59
SDC1P18827 SNORD64-201ENST00000386683 67 ntBASIC-1.12□□□□□ -2.59
SDC1P18827 RNU6-755P-201ENST00000364400 103 ntBASIC-1.13□□□□□ -2.59
SDC1P18827 RNU6-518P-201ENST00000516056 96 ntBASIC-1.13□□□□□ -2.59
SDC1P18827 MIR4499-201ENST00000584834 69 ntBASIC-1.13□□□□□ -2.59
SDC1P18827 MIR6738-201ENST00000619620 64 ntBASIC-1.13□□□□□ -2.59
SDC1P18827 RNU6-497P-201ENST00000365316 104 ntBASIC-1.14□□□□□ -2.59
SDC1P18827 RNU6-402P-201ENST00000410678 103 ntBASIC-1.14□□□□□ -2.59
SDC1P18827 AC140658.3-201ENST00000567603 271 ntBASIC-1.14□□□□□ -2.59
SDC1P18827 RNU6-924P-201ENST00000362926 108 ntBASIC-1.15□□□□□ -2.59
SDC1P18827 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.15□□□□□ -2.59
SDC1P18827 RNU6-267P-201ENST00000516714 103 ntBASIC-1.15□□□□□ -2.59
SDC1P18827 RNU6-656P-201ENST00000516785 107 ntBASIC-1.15□□□□□ -2.59
SDC1P18827 uc_338.19-201ENST00000616808 99 ntBASIC-1.15□□□□□ -2.59
SDC1P18827 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.16□□□□□ -2.6
SDC1P18827 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.16□□□□□ -2.6
SDC1P18827 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.16□□□□□ -2.6
SDC1P18827 AL021921.1-201ENST00000442774 93 ntBASIC-1.16□□□□□ -2.6
SDC1P18827 MIR4324-201ENST00000584846 72 ntBASIC-1.16□□□□□ -2.6
SDC1P18827 MIR378F-201ENST00000578143 78 ntBASIC-1.17□□□□□ -2.6
SDC1P18827 MIR548BB-201ENST00000626714 66 ntBASIC-1.17□□□□□ -2.6
SDC1P18827 MIR488-201ENST00000365739 83 ntBASIC-1.18□□□□□ -2.6
SDC1P18827 RNU6-24P-201ENST00000384440 107 ntBASIC-1.18□□□□□ -2.6
SDC1P18827 HAR1A.1-201ENST00000459583 118 ntBASIC-1.18□□□□□ -2.6
SDC1P18827 MIR382-201ENST00000637119 76 ntBASIC-1.18□□□□□ -2.6
SDC1P18827 SNORA63.4-201ENST00000362763 126 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 RNU6-640P-201ENST00000363693 105 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 RNU6-32P-201ENST00000383948 107 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 RNU6-13P-201ENST00000384248 107 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 RNU6-12P-201ENST00000384604 107 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 RNU6-41P-201ENST00000384741 107 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 AL606753.1-201ENST00000427435 87 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 RNU6-557P-201ENST00000516842 110 ntBASIC-1.19□□□□□ -2.6
SDC1P18827 U2.7-201ENST00000619197 100 ntBASIC-1.2□□□□□ -2.6
SDC1P18827 RNU6-330P-201ENST00000363015 107 ntBASIC-1.21□□□□□ -2.6
SDC1P18827 RNU6-645P-201ENST00000364649 106 ntBASIC-1.21□□□□□ -2.6
SDC1P18827 RNU6-10P-201ENST00000384036 107 ntBASIC-1.21□□□□□ -2.6
SDC1P18827 MIR587-201ENST00000384845 96 ntBASIC-1.21□□□□□ -2.6
SDC1P18827 RNU6-303P-201ENST00000517091 106 ntBASIC-1.21□□□□□ -2.6
SDC1P18827 RNU6-147P-201ENST00000383983 107 ntBASIC-1.22□□□□□ -2.6
SDC1P18827 AL603908.1-201ENST00000406098 201 ntBASIC-1.22□□□□□ -2.6
SDC1P18827 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.22□□□□□ -2.6
SDC1P18827 SCARNA18B-201ENST00000458806 135 ntBASIC-1.22□□□□□ -2.6
SDC1P18827 RNU6-686P-201ENST00000364839 107 ntBASIC-1.23□□□□□ -2.61
SDC1P18827 RNU6-215P-201ENST00000365169 102 ntBASIC-1.23□□□□□ -2.61
SDC1P18827 SNORA26.4-201ENST00000391188 123 ntBASIC-1.23□□□□□ -2.61
SDC1P18827 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.23□□□□□ -2.61
SDC1P18827 MIR548AG1-201ENST00000579932 66 ntBASIC-1.23□□□□□ -2.61
SDC1P18827 MIR4306-201ENST00000583390 91 ntBASIC-1.23□□□□□ -2.61
SDC1P18827 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.23□□□□□ -2.61
SDC1P18827 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.24□□□□□ -2.61
SDC1P18827 SNORA8.1-201ENST00000384250 140 ntBASIC-1.24□□□□□ -2.61
SDC1P18827 RNU6-807P-201ENST00000516805 107 ntBASIC-1.24□□□□□ -2.61
SDC1P18827 snoU83B.1-201ENST00000517136 88 ntBASIC-1.24□□□□□ -2.61
SDC1P18827 MIR3675-201ENST00000583661 73 ntBASIC-1.24□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 252.4 ms