Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 NOC2LP2-201ENST00000407594 1944 ntBASIC17.21■□□□□ 0.35
DDX28Q9NUL7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 FAM201B-201ENST00000458407 597 ntBASIC17.21■□□□□ 0.35
DDX28Q9NUL7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DDX28Q9NUL7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.21■□□□□ 0.34
DDX28Q9NUL7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
DDX28Q9NUL7 PRORSD1P-202ENST00000563365 2154 ntBASIC17.21■□□□□ 0.34
DDX28Q9NUL7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 HLA-B-256ENST00000639848 1089 ntBASIC17.2■□□□□ 0.34
DDX28Q9NUL7 AC133041.1-202ENST00000642053 222 ntBASIC17.2■□□□□ 0.34
DDX28Q9NUL7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
DDX28Q9NUL7 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 TFP1-202ENST00000475455 1573 ntBASIC17.19■□□□□ 0.34
DDX28Q9NUL7 AC068880.1-201ENST00000507289 2297 ntBASIC17.19■□□□□ 0.34
DDX28Q9NUL7 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.19■□□□□ 0.34
DDX28Q9NUL7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms