Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 Y_RNA.264-201ENST00000364665 102 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 MT-TY-201ENST00000387409 66 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 RNU6-592P-201ENST00000411333 103 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 RNA5SP484-201ENST00000458857 111 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 HAR1A.1-201ENST00000459583 118 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 SNORA68.3-201ENST00000515906 83 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 MIR5706-201ENST00000579841 80 ntBASIC0.49□□□□□ -2.33
LIMCH1Q9UPQ0 Y_RNA.660-201ENST00000516002 120 ntBASIC0.48□□□□□ -2.33
LIMCH1Q9UPQ0 RNU6-557P-201ENST00000516842 110 ntBASIC0.48□□□□□ -2.33
LIMCH1Q9UPQ0 NAMPTP3-201ENST00000569273 224 ntBASIC0.48□□□□□ -2.33
LIMCH1Q9UPQ0 AC069503.3-201ENST00000618674 145 ntBASIC0.48□□□□□ -2.33
LIMCH1Q9UPQ0 SNORA24B-201ENST00000384176 131 ntBASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 RNU6-35P-201ENST00000384530 107 ntBASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 RNU6-129P-201ENST00000391022 107 ntBASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 SNORD77.2-201ENST00000391045 68 ntBASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 SNORD110-201ENST00000408189 75 ntBASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 AL450471.1-201ENST00000447509 127 ntBASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 AC097510.1-201ENST00000510945 133 ntBASIC0.47□□□□□ -2.33
LIMCH1Q9UPQ0 Y_RNA.316-201ENST00000365118 111 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 SNORA2A-201ENST00000383885 135 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 Y_RNA.437-201ENST00000384113 113 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-1177P-201ENST00000391058 104 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 AC006210.1-201ENST00000424882 111 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 MIR4752-201ENST00000579672 72 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 U7.6-201ENST00000610841 64 ntBASIC0.46□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-208P-201ENST00000362431 107 ntBASIC0.45□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-652P-201ENST00000365488 107 ntBASIC0.45□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-787P-201ENST00000384032 107 ntBASIC0.45□□□□□ -2.34
LIMCH1Q9UPQ0 YWHAEP2-201ENST00000580066 112 ntBASIC0.45□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-161P-201ENST00000363051 106 ntBASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 Y_RNA.219-201ENST00000364232 113 ntBASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-686P-201ENST00000364839 107 ntBASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 Y_RNA.423-201ENST00000384057 113 ntBASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 RNU1-29P-201ENST00000606574 126 ntBASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 SNORA70.25-201ENST00000612741 95 ntBASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 MIR3202-2-201ENST00000635980 79 ntBASIC0.44□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6V-201ENST00000384105 107 ntBASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 SNORA50A-201ENST00000384225 134 ntBASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-1108P-201ENST00000516308 104 ntBASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 SNORA62.5-201ENST00000516634 120 ntBASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 RNU5B-6P-201ENST00000516765 68 ntBASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 YWHAEP3-201ENST00000582767 121 ntBASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 MIR1245B-201ENST00000636115 69 ntBASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.43□□□□□ -2.34
LIMCH1Q9UPQ0 MIR103A1-201ENST00000362165 78 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-315P-201ENST00000362666 107 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-495P-201ENST00000362995 107 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-478P-201ENST00000363904 110 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 Y_RNA.313-201ENST00000365095 103 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-1327P-201ENST00000365302 105 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 RNU6-380P-201ENST00000410207 107 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 Y_RNA.606-201ENST00000410579 103 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 MIR6755-201ENST00000619993 66 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 MIR6086-201ENST00000638065 55 ntBASIC0.42□□□□□ -2.34
LIMCH1Q9UPQ0 RNU7-24P-201ENST00000458867 62 ntBASIC0.41□□□□□ -2.34
LIMCH1Q9UPQ0 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
LIMCH1Q9UPQ0 MIRLET7A1-201ENST00000362295 80 ntBASIC0.4□□□□□ -2.35
LIMCH1Q9UPQ0 Y_RNA.12-201ENST00000362393 112 ntBASIC0.4□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-681P-201ENST00000364012 104 ntBASIC0.4□□□□□ -2.35
LIMCH1Q9UPQ0 VTRNA1-3-201ENST00000365645 89 ntBASIC0.4□□□□□ -2.35
LIMCH1Q9UPQ0 MIR2909-201ENST00000617113 69 ntBASIC0.4□□□□□ -2.35
LIMCH1Q9UPQ0 uc_338.10-201ENST00000621872 182 ntBASIC0.4□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-824P-201ENST00000363724 104 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 SNORD114-4-201ENST00000363962 75 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-340P-201ENST00000364005 107 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-54P-201ENST00000365563 107 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 Y_RNA.371-201ENST00000365591 113 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-1124P-201ENST00000384169 107 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 SNORD78.1-201ENST00000390866 65 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 RNA5SP285-201ENST00000516619 119 ntBASIC0.39□□□□□ -2.35
LIMCH1Q9UPQ0 Y_RNA.125-201ENST00000363371 111 ntBASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 Y_RNA.407-201ENST00000383986 113 ntBASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 RNA5SP63-201ENST00000391225 112 ntBASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 SNORD75.2-201ENST00000408784 58 ntBASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 HMGN2P22-201ENST00000427588 175 ntBASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-1232P-201ENST00000516299 86 ntBASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 U6.81-201ENST00000612550 106 ntBASIC0.38□□□□□ -2.35
LIMCH1Q9UPQ0 SNORA9.1-201ENST00000362412 131 ntBASIC0.37□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-1094P-201ENST00000362416 104 ntBASIC0.37□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-382P-201ENST00000365181 106 ntBASIC0.37□□□□□ -2.35
LIMCH1Q9UPQ0 MIR760-201ENST00000390220 80 ntBASIC0.37□□□□□ -2.35
LIMCH1Q9UPQ0 MIR1255A-201ENST00000408338 113 ntBASIC0.37□□□□□ -2.35
LIMCH1Q9UPQ0 AC073261.1-201ENST00000429409 121 ntBASIC0.37□□□□□ -2.35
LIMCH1Q9UPQ0 Y_RNA.94-201ENST00000363068 106 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 RNA5SP128-201ENST00000365305 116 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 SNORD42B-201ENST00000458893 67 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-303P-201ENST00000517091 106 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 MIR4514-201ENST00000581410 57 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 AC023932.2-201ENST00000603176 175 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 MIR4773-1-201ENST00000637203 78 ntBASIC0.36□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-228P-201ENST00000362700 106 ntBASIC0.35□□□□□ -2.35
LIMCH1Q9UPQ0 RNA5SP134-201ENST00000516492 96 ntBASIC0.35□□□□□ -2.35
LIMCH1Q9UPQ0 Y_RNA.685-201ENST00000516532 108 ntBASIC0.35□□□□□ -2.35
LIMCH1Q9UPQ0 MIR4473-201ENST00000583731 91 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 191.1 ms