Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.6□□□□□ -2.51
RPUSD4Q96CM3 RNU6-746P-201ENST00000384112 109 ntBASIC-0.6□□□□□ -2.51
RPUSD4Q96CM3 Y_RNA.466-201ENST00000384294 113 ntBASIC-0.6□□□□□ -2.51
RPUSD4Q96CM3 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.6□□□□□ -2.51
RPUSD4Q96CM3 FGF7P7-201ENST00000514120 227 ntBASIC-0.6□□□□□ -2.51
RPUSD4Q96CM3 AC090617.8-201ENST00000623339 167 ntBASIC-0.6□□□□□ -2.51
RPUSD4Q96CM3 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 RNU6-973P-201ENST00000364690 107 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 SNORD116-21-201ENST00000384507 92 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 RNU6-901P-201ENST00000384593 106 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 MIR7-2-201ENST00000384970 110 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 MIR517B-201ENST00000385102 67 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 RNU6-972P-201ENST00000391208 107 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 SNORA13-201ENST00000458790 133 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 RNU6-881P-201ENST00000516813 102 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 AC012531.4-201ENST00000616509 177 ntBASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.61□□□□□ -2.51
RPUSD4Q96CM3 MIR196A1-201ENST00000388006 70 ntBASIC-0.62□□□□□ -2.51
RPUSD4Q96CM3 RNU6-519P-201ENST00000410590 108 ntBASIC-0.62□□□□□ -2.51
RPUSD4Q96CM3 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.62□□□□□ -2.51
RPUSD4Q96CM3 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.62□□□□□ -2.51
RPUSD4Q96CM3 SCARNA23-201ENST00000516060 130 ntBASIC-0.62□□□□□ -2.51
RPUSD4Q96CM3 RNU6-719P-201ENST00000516671 104 ntBASIC-0.62□□□□□ -2.51
RPUSD4Q96CM3 MIR3133-201ENST00000583157 78 ntBASIC-0.62□□□□□ -2.51
RPUSD4Q96CM3 RNU6-990P-201ENST00000364385 104 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 RNY4P3-201ENST00000365254 95 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 RNU6-431P-201ENST00000383874 107 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 MIR204-201ENST00000385200 110 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 SNORD90-201ENST00000391145 111 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 RNU6-592P-201ENST00000411333 103 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 MIR3179-1-201ENST00000578940 84 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 MIR3179-2-201ENST00000579107 84 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 MIR3179-3-201ENST00000579566 84 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 MIR3668-201ENST00000582138 75 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 AP001180.6-201ENST00000584918 159 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 MIR3179-4-201ENST00000617599 84 ntBASIC-0.63□□□□□ -2.51
RPUSD4Q96CM3 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 SNORD58A-201ENST00000383875 65 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 SNORD75.2-201ENST00000408784 58 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 RNU6-887P-201ENST00000410660 100 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 AP000533.3-201ENST00000447704 118 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 RNU6-795P-201ENST00000516323 103 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 MIR3140-201ENST00000583685 90 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 MIR548Z-201ENST00000584743 97 ntBASIC-0.64□□□□□ -2.51
RPUSD4Q96CM3 SNORD115-23-201ENST00000364461 82 ntBASIC-0.65□□□□□ -2.51
RPUSD4Q96CM3 SNORA63.6-201ENST00000364921 119 ntBASIC-0.65□□□□□ -2.51
RPUSD4Q96CM3 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.65□□□□□ -2.51
RPUSD4Q96CM3 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.65□□□□□ -2.51
RPUSD4Q96CM3 RNU6-537P-201ENST00000517277 103 ntBASIC-0.65□□□□□ -2.51
RPUSD4Q96CM3 MIR4464-201ENST00000580818 92 ntBASIC-0.65□□□□□ -2.51
RPUSD4Q96CM3 MIR6773-201ENST00000612812 74 ntBASIC-0.65□□□□□ -2.51
RPUSD4Q96CM3 RNU6-81P-201ENST00000365608 104 ntBASIC-0.66□□□□□ -2.52
RPUSD4Q96CM3 RNU6-959P-201ENST00000384671 107 ntBASIC-0.66□□□□□ -2.52
RPUSD4Q96CM3 SNORD64-201ENST00000386683 67 ntBASIC-0.66□□□□□ -2.52
RPUSD4Q96CM3 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.66□□□□□ -2.52
RPUSD4Q96CM3 MIR4802-201ENST00000581881 80 ntBASIC-0.66□□□□□ -2.52
RPUSD4Q96CM3 MIR6854-201ENST00000614935 69 ntBASIC-0.66□□□□□ -2.52
RPUSD4Q96CM3 SNORD116-10-201ENST00000363791 102 ntBASIC-0.67□□□□□ -2.52
RPUSD4Q96CM3 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.67□□□□□ -2.52
RPUSD4Q96CM3 RNA5SP292-201ENST00000390974 118 ntBASIC-0.67□□□□□ -2.52
RPUSD4Q96CM3 AC008267.6-201ENST00000441664 139 ntBASIC-0.67□□□□□ -2.52
RPUSD4Q96CM3 AC022137.1-201ENST00000483735 151 ntBASIC-0.67□□□□□ -2.52
RPUSD4Q96CM3 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.68□□□□□ -2.52
RPUSD4Q96CM3 MIR518B-201ENST00000385127 83 ntBASIC-0.68□□□□□ -2.52
RPUSD4Q96CM3 MIRLET7B-201ENST00000385140 83 ntBASIC-0.68□□□□□ -2.52
RPUSD4Q96CM3 MTATP6P29-201ENST00000415057 132 ntBASIC-0.68□□□□□ -2.52
RPUSD4Q96CM3 SNORA18.5-201ENST00000516616 101 ntBASIC-0.68□□□□□ -2.52
RPUSD4Q96CM3 MIR5589-201ENST00000579442 60 ntBASIC-0.68□□□□□ -2.52
RPUSD4Q96CM3 SNORA19.1-201ENST00000410656 129 ntBASIC-0.69□□□□□ -2.52
RPUSD4Q96CM3 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.69□□□□□ -2.52
RPUSD4Q96CM3 RNU7-134P-201ENST00000458997 64 ntBASIC-0.69□□□□□ -2.52
RPUSD4Q96CM3 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.69□□□□□ -2.52
RPUSD4Q96CM3 AC021146.6-201ENST00000514659 117 ntBASIC-0.69□□□□□ -2.52
RPUSD4Q96CM3 MIR101-1-201ENST00000362265 75 ntBASIC-0.7□□□□□ -2.52
RPUSD4Q96CM3 RNU6-834P-201ENST00000362367 110 ntBASIC-0.7□□□□□ -2.52
RPUSD4Q96CM3 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.7□□□□□ -2.52
RPUSD4Q96CM3 MIR1302-5-201ENST00000408164 150 ntBASIC-0.7□□□□□ -2.52
RPUSD4Q96CM3 MIR4499-201ENST00000584834 69 ntBASIC-0.7□□□□□ -2.52
RPUSD4Q96CM3 AC006254.2-201ENST00000603259 279 ntBASIC-0.7□□□□□ -2.52
RPUSD4Q96CM3 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.7□□□□□ -2.52
RPUSD4Q96CM3 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.71□□□□□ -2.52
RPUSD4Q96CM3 MIR147A-201ENST00000385079 72 ntBASIC-0.71□□□□□ -2.52
RPUSD4Q96CM3 MIR124-2-201ENST00000385081 109 ntBASIC-0.71□□□□□ -2.52
RPUSD4Q96CM3 RNA5SP451-201ENST00000410588 110 ntBASIC-0.71□□□□□ -2.52
RPUSD4Q96CM3 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.71□□□□□ -2.52
RPUSD4Q96CM3 MIR382-201ENST00000637119 76 ntBASIC-0.71□□□□□ -2.52
RPUSD4Q96CM3 SNORD74.6-201ENST00000364796 70 ntBASIC-0.72□□□□□ -2.52
RPUSD4Q96CM3 MIR4493-201ENST00000584016 73 ntBASIC-0.72□□□□□ -2.52
RPUSD4Q96CM3 MIR6888-201ENST00000621977 67 ntBASIC-0.72□□□□□ -2.52
RPUSD4Q96CM3 RNU5F-1-201ENST00000362507 117 ntBASIC-0.73□□□□□ -2.53
RPUSD4Q96CM3 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.73□□□□□ -2.53
RPUSD4Q96CM3 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.73□□□□□ -2.53
RPUSD4Q96CM3 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.73□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 235 ms