Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
RNFT1Q5M7Z0 SNORA16.1-201ENST00000364597 132 ntBASIC1.6□□□□□ -2.15
RNFT1Q5M7Z0 MIR652-201ENST00000385278 98 ntBASIC1.6□□□□□ -2.15
RNFT1Q5M7Z0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.6□□□□□ -2.15
RNFT1Q5M7Z0 AL162376.1-201ENST00000624117 175 ntBASIC1.6□□□□□ -2.15
RNFT1Q5M7Z0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
RNFT1Q5M7Z0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.59□□□□□ -2.15
RNFT1Q5M7Z0 SCARNA16.5-201ENST00000517114 183 ntBASIC1.59□□□□□ -2.15
RNFT1Q5M7Z0 CYP3A54P-201ENST00000566950 75 ntBASIC1.59□□□□□ -2.15
RNFT1Q5M7Z0 Y_RNA.338-201ENST00000365320 114 ntBASIC1.58□□□□□ -2.16
RNFT1Q5M7Z0 MIR582-201ENST00000365731 98 ntBASIC1.58□□□□□ -2.16
RNFT1Q5M7Z0 MIR545-201ENST00000385085 106 ntBASIC1.58□□□□□ -2.16
RNFT1Q5M7Z0 MIR548E-201ENST00000408287 88 ntBASIC1.58□□□□□ -2.16
RNFT1Q5M7Z0 RNA5SP247-201ENST00000411181 105 ntBASIC1.58□□□□□ -2.16
RNFT1Q5M7Z0 SNORA70.22-201ENST00000517160 124 ntBASIC1.58□□□□□ -2.16
RNFT1Q5M7Z0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
RNFT1Q5M7Z0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.57□□□□□ -2.16
RNFT1Q5M7Z0 RNU6-1110P-201ENST00000516462 101 ntBASIC1.57□□□□□ -2.16
RNFT1Q5M7Z0 MIR4419B-201ENST00000577260 68 ntBASIC1.57□□□□□ -2.16
RNFT1Q5M7Z0 MIR4255-201ENST00000579351 72 ntBASIC1.57□□□□□ -2.16
RNFT1Q5M7Z0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.56□□□□□ -2.16
RNFT1Q5M7Z0 Y_RNA.282-201ENST00000364793 102 ntBASIC1.56□□□□□ -2.16
RNFT1Q5M7Z0 RNU4-62P-201ENST00000410125 130 ntBASIC1.56□□□□□ -2.16
RNFT1Q5M7Z0 RNU1-92P-201ENST00000517017 135 ntBASIC1.56□□□□□ -2.16
RNFT1Q5M7Z0 MIR3122-201ENST00000577243 73 ntBASIC1.56□□□□□ -2.16
RNFT1Q5M7Z0 MIR4303-201ENST00000581299 66 ntBASIC1.56□□□□□ -2.16
RNFT1Q5M7Z0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.55□□□□□ -2.16
RNFT1Q5M7Z0 RNU6-518P-201ENST00000516056 96 ntBASIC1.55□□□□□ -2.16
RNFT1Q5M7Z0 U6.96-201ENST00000636425 70 ntBASIC1.55□□□□□ -2.16
RNFT1Q5M7Z0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
RNFT1Q5M7Z0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
RNFT1Q5M7Z0 MIR527-201ENST00000385244 85 ntBASIC1.54□□□□□ -2.16
RNFT1Q5M7Z0 SNORD105-201ENST00000386910 85 ntBASIC1.54□□□□□ -2.16
RNFT1Q5M7Z0 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.54□□□□□ -2.16
RNFT1Q5M7Z0 MIR4498-201ENST00000577599 66 ntBASIC1.54□□□□□ -2.16
RNFT1Q5M7Z0 MIR3678-201ENST00000578455 94 ntBASIC1.54□□□□□ -2.16
RNFT1Q5M7Z0 MIR502-201ENST00000606349 86 ntBASIC1.54□□□□□ -2.16
RNFT1Q5M7Z0 MIR6828-201ENST00000636181 60 ntBASIC1.54□□□□□ -2.16
RNFT1Q5M7Z0 RNU6-247P-201ENST00000362636 107 ntBASIC1.53□□□□□ -2.16
RNFT1Q5M7Z0 RNU6-810P-201ENST00000364001 107 ntBASIC1.53□□□□□ -2.16
RNFT1Q5M7Z0 RNU6-246P-201ENST00000384702 107 ntBASIC1.53□□□□□ -2.16
RNFT1Q5M7Z0 U7.7-201ENST00000459276 60 ntBASIC1.53□□□□□ -2.16
RNFT1Q5M7Z0 MIR548AE1-201ENST00000583292 70 ntBASIC1.53□□□□□ -2.16
RNFT1Q5M7Z0 MIR378A-201ENST00000362177 66 ntBASIC1.52□□□□□ -2.17
RNFT1Q5M7Z0 AC002429.1-201ENST00000437672 148 ntBASIC1.52□□□□□ -2.17
RNFT1Q5M7Z0 RNU6-1053P-201ENST00000515930 101 ntBASIC1.52□□□□□ -2.17
RNFT1Q5M7Z0 MIR516B1-201ENST00000385211 90 ntBASIC1.51□□□□□ -2.17
RNFT1Q5M7Z0 AP1B1P2-201ENST00000416196 106 ntBASIC1.51□□□□□ -2.17
RNFT1Q5M7Z0 RNU6-419P-201ENST00000517030 63 ntBASIC1.51□□□□□ -2.17
RNFT1Q5M7Z0 AC243829.3-201ENST00000622177 108 ntBASIC1.51□□□□□ -2.17
RNFT1Q5M7Z0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.51□□□□□ -2.17
RNFT1Q5M7Z0 Y_RNA.164-201ENST00000363709 102 ntBASIC1.5□□□□□ -2.17
RNFT1Q5M7Z0 SNORA67.5-201ENST00000391036 107 ntBASIC1.5□□□□□ -2.17
RNFT1Q5M7Z0 snoU13.31-201ENST00000607291 104 ntBASIC1.5□□□□□ -2.17
RNFT1Q5M7Z0 SNORD1B-201ENST00000363091 84 ntBASIC1.49□□□□□ -2.17
RNFT1Q5M7Z0 MIR573-201ENST00000384964 99 ntBASIC1.49□□□□□ -2.17
RNFT1Q5M7Z0 MIR519A2-201ENST00000384990 87 ntBASIC1.49□□□□□ -2.17
RNFT1Q5M7Z0 SNORD89-201ENST00000390981 114 ntBASIC1.49□□□□□ -2.17
RNFT1Q5M7Z0 RNU6-172P-201ENST00000411000 93 ntBASIC1.49□□□□□ -2.17
RNFT1Q5M7Z0 AC006210.1-201ENST00000424882 111 ntBASIC1.49□□□□□ -2.17
RNFT1Q5M7Z0 Y_RNA.224-201ENST00000364308 111 ntBASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 SNORD48-201ENST00000364953 64 ntBASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 SNORD110-201ENST00000408189 75 ntBASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 FABP5P4-201ENST00000437203 171 ntBASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 MIR4473-201ENST00000583731 91 ntBASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 AC243829.6-201ENST00000612652 106 ntBASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 AC090617.8-201ENST00000623339 167 ntBASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
RNFT1Q5M7Z0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
RNFT1Q5M7Z0 MIR1255B2-201ENST00000408618 67 ntBASIC1.47□□□□□ -2.17
RNFT1Q5M7Z0 MIR3612-201ENST00000579753 87 ntBASIC1.47□□□□□ -2.17
RNFT1Q5M7Z0 MIR4490-201ENST00000582647 84 ntBASIC1.47□□□□□ -2.17
RNFT1Q5M7Z0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
RNFT1Q5M7Z0 MIR429-201ENST00000362106 83 ntBASIC1.46□□□□□ -2.18
RNFT1Q5M7Z0 RNU6-1250P-201ENST00000391218 107 ntBASIC1.46□□□□□ -2.18
RNFT1Q5M7Z0 RNU7-95P-201ENST00000459222 64 ntBASIC1.46□□□□□ -2.18
RNFT1Q5M7Z0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.46□□□□□ -2.18
RNFT1Q5M7Z0 RNU1-42P-201ENST00000364033 160 ntBASIC1.45□□□□□ -2.18
RNFT1Q5M7Z0 MIR222-201ENST00000384992 110 ntBASIC1.45□□□□□ -2.18
RNFT1Q5M7Z0 RNA5SP227-201ENST00000516184 113 ntBASIC1.45□□□□□ -2.18
RNFT1Q5M7Z0 RNU7-154P-201ENST00000516194 62 ntBASIC1.45□□□□□ -2.18
RNFT1Q5M7Z0 Y_RNA.226-201ENST00000364337 114 ntBASIC1.44□□□□□ -2.18
RNFT1Q5M7Z0 RNU6-997P-201ENST00000384725 107 ntBASIC1.44□□□□□ -2.18
RNFT1Q5M7Z0 AC244090.1-201ENST00000441884 93 ntBASIC1.44□□□□□ -2.18
RNFT1Q5M7Z0 RPS29P23-201ENST00000458635 123 ntBASIC1.44□□□□□ -2.18
RNFT1Q5M7Z0 MIR1323-201ENST00000408090 73 ntBASIC1.43□□□□□ -2.18
RNFT1Q5M7Z0 SNORD2-201ENST00000459163 69 ntBASIC1.43□□□□□ -2.18
RNFT1Q5M7Z0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
RNFT1Q5M7Z0 Y_RNA.109-201ENST00000363215 102 ntBASIC1.42□□□□□ -2.18
RNFT1Q5M7Z0 SNORA25-201ENST00000384384 134 ntBASIC1.42□□□□□ -2.18
RNFT1Q5M7Z0 MIR1287-201ENST00000408492 90 ntBASIC1.42□□□□□ -2.18
RNFT1Q5M7Z0 RNU6-321P-201ENST00000410912 106 ntBASIC1.42□□□□□ -2.18
RNFT1Q5M7Z0 RNU7-160P-201ENST00000516660 62 ntBASIC1.42□□□□□ -2.18
RNFT1Q5M7Z0 SNORD53B-201ENST00000577887 78 ntBASIC1.42□□□□□ -2.18
RNFT1Q5M7Z0 MIR20A-201ENST00000362279 71 ntBASIC1.41□□□□□ -2.18
RNFT1Q5M7Z0 SNORD26-201ENST00000384147 75 ntBASIC1.41□□□□□ -2.18
RNFT1Q5M7Z0 RNU6-696P-201ENST00000390834 107 ntBASIC1.41□□□□□ -2.18
RNFT1Q5M7Z0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
RNFT1Q5M7Z0 RNA5SP470-201ENST00000516463 106 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 1269.9 ms