Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 MIR451A-201ENST00000385059 72 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 SNORA19.1-201ENST00000410656 129 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 AC244250.2-201ENST00000418731 148 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 RNU6-412P-201ENST00000516434 106 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 RNU6-537P-201ENST00000517277 103 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 AL365222.1-201ENST00000614661 98 ntBASIC-0.27□□□□□ -2.45
PEX3P56589 RNU4-36P-201ENST00000364294 144 ntBASIC-0.28□□□□□ -2.45
PEX3P56589 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.28□□□□□ -2.45
PEX3P56589 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.28□□□□□ -2.45
PEX3P56589 U3.27-201ENST00000391237 200 ntBASIC-0.28□□□□□ -2.45
PEX3P56589 SNORD4A-201ENST00000459174 72 ntBASIC-0.28□□□□□ -2.45
PEX3P56589 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 SNORD114-12-201ENST00000365400 75 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 RNU6-132P-201ENST00000383863 107 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 RNU6-811P-201ENST00000384069 107 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 MIR548M-201ENST00000408260 86 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 RNU6-795P-201ENST00000516323 103 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 RNU6-65P-201ENST00000516332 98 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 MIR4536-1-201ENST00000583537 88 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.29□□□□□ -2.46
PEX3P56589 RNA5SP205-201ENST00000364653 136 ntBASIC-0.3□□□□□ -2.46
PEX3P56589 RNU6-476P-201ENST00000384726 107 ntBASIC-0.3□□□□□ -2.46
PEX3P56589 MIR652-201ENST00000385278 98 ntBASIC-0.3□□□□□ -2.46
PEX3P56589 SNORD4B-201ENST00000459083 72 ntBASIC-0.3□□□□□ -2.46
PEX3P56589 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.3□□□□□ -2.46
PEX3P56589 RNA5SP257-201ENST00000363023 116 ntBASIC-0.31□□□□□ -2.46
PEX3P56589 SNORD49B-201ENST00000365172 72 ntBASIC-0.31□□□□□ -2.46
PEX3P56589 MIR3064-201ENST00000581130 66 ntBASIC-0.31□□□□□ -2.46
PEX3P56589 MIR20A-201ENST00000362279 71 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 RNU6-54P-201ENST00000365563 107 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 SNORA49-201ENST00000386157 136 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 AC244090.1-201ENST00000441884 93 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 SCARNA23-201ENST00000516060 130 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 MIR3666-201ENST00000607845 111 ntBASIC-0.32□□□□□ -2.46
PEX3P56589 RNA5SP98-201ENST00000363158 137 ntBASIC-0.33□□□□□ -2.46
PEX3P56589 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.33□□□□□ -2.46
PEX3P56589 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.33□□□□□ -2.46
PEX3P56589 RNU6-834P-201ENST00000362367 110 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 SNORD113-1-201ENST00000365321 69 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 SNORA24B-201ENST00000384176 131 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 RNU6-22P-201ENST00000384355 107 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 RNU6-106P-201ENST00000384405 107 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 RNU6-589P-201ENST00000516485 107 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 AC104996.3-201ENST00000590718 94 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 AC145423.2-201ENST00000610631 239 ntBASIC-0.34□□□□□ -2.46
PEX3P56589 MIR214-201ENST00000385214 110 ntBASIC-0.35□□□□□ -2.47
PEX3P56589 RNU6-554P-201ENST00000410466 106 ntBASIC-0.35□□□□□ -2.47
PEX3P56589 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.35□□□□□ -2.47
PEX3P56589 SNORD42B-201ENST00000458893 67 ntBASIC-0.35□□□□□ -2.47
PEX3P56589 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.35□□□□□ -2.47
PEX3P56589 MIR3910-1-201ENST00000580936 111 ntBASIC-0.35□□□□□ -2.47
PEX3P56589 SNORA63.2-201ENST00000362603 126 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 SNORD58A-201ENST00000383875 65 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 MIR590-201ENST00000385008 97 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 MIR329-2-201ENST00000385029 84 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 RNA5SP300-201ENST00000391197 107 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 RNU6-972P-201ENST00000391208 107 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.36□□□□□ -2.47
PEX3P56589 RNU6-887P-201ENST00000410660 100 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 AL590491.3-201ENST00000610731 82 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 MIR6129-201ENST00000616087 109 ntBASIC-0.36□□□□□ -2.47
PEX3P56589 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.37□□□□□ -2.47
PEX3P56589 MIR582-201ENST00000365731 98 ntBASIC-0.37□□□□□ -2.47
PEX3P56589 MIR548U-201ENST00000390728 81 ntBASIC-0.37□□□□□ -2.47
PEX3P56589 RNU6-479P-201ENST00000516348 105 ntBASIC-0.37□□□□□ -2.47
PEX3P56589 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.38□□□□□ -2.47
PEX3P56589 RNA5SP292-201ENST00000390974 118 ntBASIC-0.38□□□□□ -2.47
PEX3P56589 MIR548E-201ENST00000408287 88 ntBASIC-0.38□□□□□ -2.47
PEX3P56589 RNU6-519P-201ENST00000410590 108 ntBASIC-0.38□□□□□ -2.47
PEX3P56589 RNU6-62P-201ENST00000516526 102 ntBASIC-0.38□□□□□ -2.47
PEX3P56589 RNA5SP285-201ENST00000516619 119 ntBASIC-0.38□□□□□ -2.47
PEX3P56589 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.39□□□□□ -2.47
PEX3P56589 SNORA19-201ENST00000384737 128 ntBASIC-0.39□□□□□ -2.47
PEX3P56589 MIR9-2-201ENST00000384838 87 ntBASIC-0.39□□□□□ -2.47
PEX3P56589 MIR1302-5-201ENST00000408164 150 ntBASIC-0.39□□□□□ -2.47
PEX3P56589 FGF7P7-201ENST00000514120 227 ntBASIC-0.39□□□□□ -2.47
PEX3P56589 MIR3140-201ENST00000583685 90 ntBASIC-0.39□□□□□ -2.47
PEX3P56589 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.4□□□□□ -2.47
PEX3P56589 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.4□□□□□ -2.47
PEX3P56589 RNU6-719P-201ENST00000516671 104 ntBASIC-0.4□□□□□ -2.47
PEX3P56589 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.4□□□□□ -2.47
PEX3P56589 AC132825.6-201ENST00000638861 357 ntBASIC-0.4□□□□□ -2.47
PEX3P56589 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.4□□□□□ -2.47
PEX3P56589 RNU6-495P-201ENST00000362995 107 ntBASIC-0.41□□□□□ -2.48
PEX3P56589 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.41□□□□□ -2.48
PEX3P56589 SNORD116-10-201ENST00000363791 102 ntBASIC-0.41□□□□□ -2.48
PEX3P56589 SNORD90-201ENST00000391145 111 ntBASIC-0.41□□□□□ -2.48
PEX3P56589 RNU6-320P-201ENST00000516511 106 ntBASIC-0.41□□□□□ -2.48
PEX3P56589 RNU6-762P-201ENST00000517107 102 ntBASIC-0.41□□□□□ -2.48
PEX3P56589 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.42□□□□□ -2.48
PEX3P56589 SNORD114-31-201ENST00000363219 75 ntBASIC-0.42□□□□□ -2.48
PEX3P56589 SNORD114-4-201ENST00000363962 75 ntBASIC-0.42□□□□□ -2.48
PEX3P56589 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.42□□□□□ -2.48
PEX3P56589 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.42□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms