Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RNU6-208P-201ENST00000362431 107 ntBASIC-1.27□□□□□ -2.61
SHOX2O60902 RNU6-235P-201ENST00000362644 107 ntBASIC-1.27□□□□□ -2.61
SHOX2O60902 RNU6-924P-201ENST00000362926 108 ntBASIC-1.27□□□□□ -2.61
SHOX2O60902 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.27□□□□□ -2.61
SHOX2O60902 RNU6-664P-201ENST00000362381 107 ntBASIC-1.28□□□□□ -2.61
SHOX2O60902 RNU6-774P-201ENST00000363238 107 ntBASIC-1.28□□□□□ -2.61
SHOX2O60902 Y_RNA.210-201ENST00000364161 110 ntBASIC-1.28□□□□□ -2.61
SHOX2O60902 SNORD101-201ENST00000384027 73 ntBASIC-1.28□□□□□ -2.61
SHOX2O60902 AL078595.1-201ENST00000404458 226 ntBASIC-1.28□□□□□ -2.61
SHOX2O60902 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.28□□□□□ -2.61
SHOX2O60902 MTATP6P21-201ENST00000440681 189 ntBASIC-1.28□□□□□ -2.61
SHOX2O60902 Y_RNA.54-201ENST00000362766 105 ntBASIC-1.29□□□□□ -2.62
SHOX2O60902 MIR548H3-201ENST00000408771 118 ntBASIC-1.29□□□□□ -2.62
SHOX2O60902 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.29□□□□□ -2.62
SHOX2O60902 AL353691.2-201ENST00000443795 59 ntBASIC-1.29□□□□□ -2.62
SHOX2O60902 RNU6-803P-201ENST00000516034 102 ntBASIC-1.29□□□□□ -2.62
SHOX2O60902 AC108081.1-201ENST00000604358 221 ntBASIC-1.29□□□□□ -2.62
SHOX2O60902 Y_RNA.58-201ENST00000362807 102 ntBASIC-1.3□□□□□ -2.62
SHOX2O60902 RNY3P1-201ENST00000365085 102 ntBASIC-1.3□□□□□ -2.62
SHOX2O60902 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.3□□□□□ -2.62
SHOX2O60902 SNORD38.2-201ENST00000384470 69 ntBASIC-1.3□□□□□ -2.62
SHOX2O60902 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.3□□□□□ -2.62
SHOX2O60902 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.3□□□□□ -2.62
SHOX2O60902 SNORD42B-201ENST00000458893 67 ntBASIC-1.3□□□□□ -2.62
SHOX2O60902 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.3□□□□□ -2.62
SHOX2O60902 RNU6-521P-201ENST00000516663 105 ntBASIC-1.3□□□□□ -2.62
SHOX2O60902 SNORA63.6-201ENST00000364921 119 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 Y_RNA.356-201ENST00000365475 113 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 RNU6-841P-201ENST00000383872 107 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 RNU6-80P-201ENST00000384195 107 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 Y_RNA.455-201ENST00000384230 98 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 AC090616.4-201ENST00000448026 115 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 MTND3P22-201ENST00000510932 243 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.31□□□□□ -2.62
SHOX2O60902 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-1.31□□□□□ -2.62
SHOX2O60902 RNU6-647P-201ENST00000364243 107 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 RNU6-935P-201ENST00000410371 100 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 Y_RNA.651-201ENST00000459380 103 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 Y_RNA.797-201ENST00000515977 94 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 AP002392.1-201ENST00000537692 208 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.32□□□□□ -2.62
SHOX2O60902 SNORD42.2-201ENST00000365570 69 ntBASIC-1.33□□□□□ -2.62
SHOX2O60902 U3.27-201ENST00000391237 200 ntBASIC-1.33□□□□□ -2.62
SHOX2O60902 RNU4-88P-201ENST00000411220 86 ntBASIC-1.33□□□□□ -2.62
SHOX2O60902 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.33□□□□□ -2.62
SHOX2O60902 RNY4P20-201ENST00000516678 93 ntBASIC-1.33□□□□□ -2.62
SHOX2O60902 RNU6-988P-201ENST00000519081 107 ntBASIC-1.33□□□□□ -2.62
SHOX2O60902 AP002795.1-201ENST00000534879 84 ntBASIC-1.33□□□□□ -2.62
SHOX2O60902 MIR369-201ENST00000362155 70 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 RNU6-508P-201ENST00000363231 103 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 RNU6-1009P-201ENST00000390996 107 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 RNU6-695P-201ENST00000391157 104 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 AC090617.8-201ENST00000623339 167 ntBASIC-1.34□□□□□ -2.62
SHOX2O60902 Y_RNA.237-201ENST00000364439 102 ntBASIC-1.35□□□□□ -2.63
SHOX2O60902 SNORD19-201ENST00000391191 68 ntBASIC-1.35□□□□□ -2.63
SHOX2O60902 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.35□□□□□ -2.63
SHOX2O60902 RNU6-875P-201ENST00000516488 106 ntBASIC-1.35□□□□□ -2.63
SHOX2O60902 AC113195.1-201ENST00000579952 141 ntBASIC-1.35□□□□□ -2.63
SHOX2O60902 MIR548AM-201ENST00000584298 74 ntBASIC-1.35□□□□□ -2.63
SHOX2O60902 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.36□□□□□ -2.63
SHOX2O60902 Y_RNA.431-201ENST00000384086 102 ntBASIC-1.36□□□□□ -2.63
SHOX2O60902 RNU6-768P-201ENST00000384683 107 ntBASIC-1.36□□□□□ -2.63
SHOX2O60902 MIR451A-201ENST00000385059 72 ntBASIC-1.36□□□□□ -2.63
SHOX2O60902 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.36□□□□□ -2.63
SHOX2O60902 MIR4748-201ENST00000578076 82 ntBASIC-1.36□□□□□ -2.63
SHOX2O60902 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.36□□□□□ -2.63
SHOX2O60902 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.36□□□□□ -2.63
SHOX2O60902 RNU4-40P-201ENST00000364351 143 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 MT-TI-201ENST00000387365 69 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 AC018880.2-201ENST00000414265 201 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 RNY3P16-201ENST00000516338 101 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 MIR3149-201ENST00000584629 83 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.37□□□□□ -2.63
SHOX2O60902 RNU6-818P-201ENST00000364837 108 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 RBMX2P4-201ENST00000441256 376 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 RNU6-719P-201ENST00000516671 104 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 RNU7-6P-201ENST00000516845 62 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 MIR4643-201ENST00000577473 78 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 MIR1255B1-201ENST00000636325 63 ntBASIC-1.38□□□□□ -2.63
SHOX2O60902 RNU6-495P-201ENST00000362995 107 ntBASIC-1.39□□□□□ -2.63
SHOX2O60902 Y_RNA.158-201ENST00000363651 101 ntBASIC-1.39□□□□□ -2.63
SHOX2O60902 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.39□□□□□ -2.63
SHOX2O60902 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.39□□□□□ -2.63
SHOX2O60902 MIR548G-201ENST00000408442 89 ntBASIC-1.39□□□□□ -2.63
SHOX2O60902 MIR3123-201ENST00000583417 75 ntBASIC-1.39□□□□□ -2.63
SHOX2O60902 AC139792.2-201ENST00000624218 587 ntBASIC-1.39□□□□□ -2.63
SHOX2O60902 MIR5683-201ENST00000636514 76 ntBASIC-1.39□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 843.8 ms