Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RNU2-38P-201ENST00000410856 79 ntBASIC-0.93□□□□□ -2.56
USP42Q9H9J4 AP002392.1-201ENST00000537692 208 ntBASIC-0.93□□□□□ -2.56
USP42Q9H9J4 AC140658.3-201ENST00000567603 271 ntBASIC-0.93□□□□□ -2.56
USP42Q9H9J4 MIR382-201ENST00000637119 76 ntBASIC-0.93□□□□□ -2.56
USP42Q9H9J4 RNU6-664P-201ENST00000362381 107 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 RNU6-54P-201ENST00000365563 107 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 SNORD18B-201ENST00000365659 72 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 AC107027.2-201ENST00000512197 115 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 RN7SKP19-201ENST00000516016 252 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.94□□□□□ -2.56
USP42Q9H9J4 SNORD74.6-201ENST00000364796 70 ntBASIC-0.95□□□□□ -2.56
USP42Q9H9J4 MIR601-201ENST00000385256 79 ntBASIC-0.95□□□□□ -2.56
USP42Q9H9J4 SNORD58.1-201ENST00000391313 66 ntBASIC-0.95□□□□□ -2.56
USP42Q9H9J4 MIR4801-201ENST00000582704 82 ntBASIC-0.95□□□□□ -2.56
USP42Q9H9J4 AC021753.1-201ENST00000635724 168 ntBASIC-0.95□□□□□ -2.56
USP42Q9H9J4 MIR3658-201ENST00000636291 56 ntBASIC-0.95□□□□□ -2.56
USP42Q9H9J4 U6.104-201ENST00000637979 90 ntBASIC-0.95□□□□□ -2.56
USP42Q9H9J4 RNA5SP192-201ENST00000364404 120 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 RNU6-639P-201ENST00000384074 107 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 Y_RNA.535-201ENST00000384612 99 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 MIR548G-201ENST00000408442 89 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 SNORA7.5-201ENST00000410672 110 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 AL353813.1-201ENST00000440700 253 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 MIR3115-201ENST00000577915 68 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 MIR3646-201ENST00000578301 84 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 MIR4306-201ENST00000583390 91 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 MIR4320-201ENST00000636981 65 ntBASIC-0.96□□□□□ -2.56
USP42Q9H9J4 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 Y_RNA.574-201ENST00000384766 95 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 RNU6-466P-201ENST00000391224 103 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 RNU6-935P-201ENST00000410371 100 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 SNORD42B-201ENST00000458893 67 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 MIR3165-201ENST00000579874 75 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 MIR3163-201ENST00000581592 73 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 RNU6-90P-201ENST00000606352 106 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 snoR1.1-201ENST00000628177 80 ntBASIC-0.97□□□□□ -2.57
USP42Q9H9J4 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.98□□□□□ -2.57
USP42Q9H9J4 SNORD114-4-201ENST00000363962 75 ntBASIC-0.98□□□□□ -2.57
USP42Q9H9J4 RNU6-905P-201ENST00000384434 107 ntBASIC-0.98□□□□□ -2.57
USP42Q9H9J4 MTCYBP6-201ENST00000441810 138 ntBASIC-0.98□□□□□ -2.57
USP42Q9H9J4 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.98□□□□□ -2.57
USP42Q9H9J4 AL512310.12-203ENST00000640543 90 ntBASIC-0.98□□□□□ -2.57
USP42Q9H9J4 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.99□□□□□ -2.57
USP42Q9H9J4 RNU6-312P-201ENST00000364629 107 ntBASIC-0.99□□□□□ -2.57
USP42Q9H9J4 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.99□□□□□ -2.57
USP42Q9H9J4 MIR548H3-201ENST00000408771 118 ntBASIC-0.99□□□□□ -2.57
USP42Q9H9J4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.99□□□□□ -2.57
USP42Q9H9J4 SNORD38.1-201ENST00000363863 68 ntBASIC-1□□□□□ -2.57
USP42Q9H9J4 Y_RNA.468-201ENST00000384298 102 ntBASIC-1□□□□□ -2.57
USP42Q9H9J4 MIR451A-201ENST00000385059 72 ntBASIC-1□□□□□ -2.57
USP42Q9H9J4 MIR548F4-201ENST00000408515 105 ntBASIC-1□□□□□ -2.57
USP42Q9H9J4 SNORD18.2-201ENST00000459604 70 ntBASIC-1□□□□□ -2.57
USP42Q9H9J4 Y_RNA.677-201ENST00000516401 85 ntBASIC-1□□□□□ -2.57
USP42Q9H9J4 MIR6773-201ENST00000612812 74 ntBASIC-1□□□□□ -2.57
USP42Q9H9J4 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.01□□□□□ -2.57
USP42Q9H9J4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.01□□□□□ -2.57
USP42Q9H9J4 RNU6-1219P-201ENST00000516143 112 ntBASIC-1.01□□□□□ -2.57
USP42Q9H9J4 RNU7-121P-201ENST00000516604 62 ntBASIC-1.01□□□□□ -2.57
USP42Q9H9J4 U3.27-201ENST00000391237 200 ntBASIC-1.02□□□□□ -2.57
USP42Q9H9J4 RNU6-592P-201ENST00000411333 103 ntBASIC-1.02□□□□□ -2.57
USP42Q9H9J4 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.02□□□□□ -2.57
USP42Q9H9J4 RNU6-75P-201ENST00000515944 104 ntBASIC-1.02□□□□□ -2.57
USP42Q9H9J4 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.03□□□□□ -2.57
USP42Q9H9J4 RNU6-363P-201ENST00000362895 105 ntBASIC-1.03□□□□□ -2.57
USP42Q9H9J4 RNU6-239P-201ENST00000390990 99 ntBASIC-1.03□□□□□ -2.57
USP42Q9H9J4 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.03□□□□□ -2.57
USP42Q9H9J4 RNU6-719P-201ENST00000516671 104 ntBASIC-1.03□□□□□ -2.57
USP42Q9H9J4 MIR3121-201ENST00000579680 77 ntBASIC-1.03□□□□□ -2.57
USP42Q9H9J4 Y_RNA.198-201ENST00000364013 98 ntBASIC-1.04□□□□□ -2.58
USP42Q9H9J4 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.04□□□□□ -2.58
USP42Q9H9J4 SNORD37.2-201ENST00000391075 66 ntBASIC-1.04□□□□□ -2.58
USP42Q9H9J4 RNU6-337P-201ENST00000391243 106 ntBASIC-1.04□□□□□ -2.58
USP42Q9H9J4 Y_RNA.61-201ENST00000362835 102 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 SNORD115-23-201ENST00000364461 82 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 MIR124-2-201ENST00000385081 109 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 MIRLET7B-201ENST00000385140 83 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 MIR759-201ENST00000390224 91 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 Y_RNA.720-201ENST00000517166 92 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 AC022559.1-201ENST00000520905 205 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.05□□□□□ -2.58
USP42Q9H9J4 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.06□□□□□ -2.58
USP42Q9H9J4 MIR548D2-201ENST00000384955 97 ntBASIC-1.06□□□□□ -2.58
USP42Q9H9J4 FGF7P7-201ENST00000514120 227 ntBASIC-1.06□□□□□ -2.58
USP42Q9H9J4 RNA5SP461-201ENST00000516451 104 ntBASIC-1.06□□□□□ -2.58
USP42Q9H9J4 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.06□□□□□ -2.58
USP42Q9H9J4 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.06□□□□□ -2.58
USP42Q9H9J4 Y_RNA.288-201ENST00000364854 92 ntBASIC-1.07□□□□□ -2.58
USP42Q9H9J4 SNORA63.6-201ENST00000364921 119 ntBASIC-1.07□□□□□ -2.58
USP42Q9H9J4 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.07□□□□□ -2.58
USP42Q9H9J4 snoU83B.1-201ENST00000517136 88 ntBASIC-1.07□□□□□ -2.58
USP42Q9H9J4 Y_RNA.213-201ENST00000364178 111 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 Y_RNA.233-201ENST00000364407 101 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 SNORD114-17-201ENST00000364699 75 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 RNU4-71P-201ENST00000516258 113 ntBASIC-1.08□□□□□ -2.58
USP42Q9H9J4 Y_RNA.680-201ENST00000516441 93 ntBASIC-1.08□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 160.5 ms