Protein–RNA interactions for Protein: Q9BYR4

KRTAP4-3, Keratin-associated protein 4-3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRTAP4-3Q9BYR4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
KRTAP4-3Q9BYR4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
KRTAP4-3Q9BYR4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC0.85□□□□□ -2.27
KRTAP4-3Q9BYR4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
KRTAP4-3Q9BYR4 MAPK10-322ENST00000641485 4530 ntBASIC0.85□□□□□ -2.27
KRTAP4-3Q9BYR4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 RNU1-58P-201ENST00000362413 163 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 SNORD114-6-201ENST00000364393 72 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 SNORA67.3-201ENST00000384366 140 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MIR153-1-201ENST00000384914 90 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MIR516B1-201ENST00000385211 90 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MIR548E-201ENST00000408287 88 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 AL161788.1-201ENST00000441805 169 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 RPL30P7-201ENST00000479312 323 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MIR4460-201ENST00000577862 86 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MIR3605-201ENST00000583214 100 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MIR4769-201ENST00000584126 77 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 AC116447.1-201ENST00000613153 453 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 MIR5087-201ENST00000635826 76 ntBASIC0.84□□□□□ -2.27
KRTAP4-3Q9BYR4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.84□□□□□ -2.28
KRTAP4-3Q9BYR4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.28
KRTAP4-3Q9BYR4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC0.84□□□□□ -2.28
KRTAP4-3Q9BYR4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC0.84□□□□□ -2.28
KRTAP4-3Q9BYR4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
KRTAP4-3Q9BYR4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.28
KRTAP4-3Q9BYR4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR21-201ENST00000362134 72 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 U8.2-201ENST00000363156 134 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 SNORA27.2-201ENST00000363365 126 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU6-535P-201ENST00000384722 107 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR27B-201ENST00000385129 97 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MT-TN-201ENST00000387400 73 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR708-201ENST00000390708 88 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU6-1111P-201ENST00000391118 107 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR1289-2-201ENST00000408360 111 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR1283-2-201ENST00000408621 87 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 RNY3P8-201ENST00000411366 126 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR18B-201ENST00000454574 71 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 snoU13.10-201ENST00000459301 103 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 AC026436.1-201ENST00000510537 270 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 RNA5SP112-201ENST00000515937 99 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 SCARNA17.3-201ENST00000516381 125 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 RNA5SP24-201ENST00000516478 95 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU4-60P-201ENST00000517239 135 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR4435-1-201ENST00000582552 80 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 AP000942.3-201ENST00000603702 160 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 SNRPGP19-201ENST00000603826 189 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 FTX_4.1-201ENST00000616291 147 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 AL513423.1-201ENST00000621695 132 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 AC110079.1-202ENST00000635213 138 ntBASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
KRTAP4-3Q9BYR4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR424-201ENST00000362227 98 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU6-396P-201ENST00000365369 105 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU1-109P-201ENST00000383960 147 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR591-201ENST00000385290 95 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR764-201ENST00000390811 85 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 SNORA75.2-201ENST00000391138 150 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 SNORA75.3-201ENST00000391231 150 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR1257-201ENST00000408490 117 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 RNA5SP129-201ENST00000410276 118 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU2-48P-201ENST00000410694 191 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU4-53P-201ENST00000410828 140 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU6-717P-201ENST00000459076 104 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 SNORD63.1-201ENST00000516178 80 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 RNU7-161P-201ENST00000517289 62 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR4716-201ENST00000579628 84 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 AC104408.1-201ENST00000605241 170 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 AC110741.2-201ENST00000605278 268 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 AC022202.1-201ENST00000613515 211 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR6715B-201ENST00000637172 77 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 MIR7153-201ENST00000637758 57 ntBASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
KRTAP4-3Q9BYR4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
KRTAP4-3Q9BYR4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms