Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MT-TN-201ENST00000387400 73 ntBASIC2.33□□□□□ -2.04
NPAS3Q8IXF0 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
NPAS3Q8IXF0 RNU7-185P-201ENST00000459215 60 ntBASIC2.33□□□□□ -2.04
NPAS3Q8IXF0 snoU13.21-201ENST00000459368 105 ntBASIC2.33□□□□□ -2.04
NPAS3Q8IXF0 RNA5SP147-201ENST00000516493 109 ntBASIC2.33□□□□□ -2.04
NPAS3Q8IXF0 MIR6766-201ENST00000622641 72 ntBASIC2.33□□□□□ -2.04
NPAS3Q8IXF0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 RNA5SP245-201ENST00000364239 121 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 SNORA67.3-201ENST00000384366 140 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 MIR548C-201ENST00000384815 97 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 SUMO2P12-201ENST00000405924 140 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 AC004965.1-201ENST00000413033 213 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 AL603825.1-201ENST00000438481 80 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 snoU13.25-201ENST00000458945 104 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 AC138907.6-201ENST00000568401 126 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 AC138869.1-201ENST00000568623 124 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 MIR3657-201ENST00000584818 117 ntBASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS3Q8IXF0 MIR630-201ENST00000384957 97 ntBASIC2.31□□□□□ -2.04
NPAS3Q8IXF0 MIR1257-201ENST00000408490 117 ntBASIC2.31□□□□□ -2.04
NPAS3Q8IXF0 AC092427.1-202ENST00000430569 476 ntBASIC2.31□□□□□ -2.04
NPAS3Q8IXF0 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC2.31□□□□□ -2.04
NPAS3Q8IXF0 MIR18B-201ENST00000454574 71 ntBASIC2.31□□□□□ -2.04
NPAS3Q8IXF0 MIR219B-201ENST00000637023 88 ntBASIC2.31□□□□□ -2.04
NPAS3Q8IXF0 RNU6-495P-201ENST00000362995 107 ntBASIC2.3□□□□□ -2.04
NPAS3Q8IXF0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
NPAS3Q8IXF0 RNA5SP247-201ENST00000411181 105 ntBASIC2.3□□□□□ -2.04
NPAS3Q8IXF0 RNU6-1089P-201ENST00000516473 104 ntBASIC2.3□□□□□ -2.04
NPAS3Q8IXF0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
NPAS3Q8IXF0 RNA5SP215-201ENST00000363440 122 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 MIR513A1-201ENST00000385138 129 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 RNA5SP100-201ENST00000410903 110 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 RNA5SP59-201ENST00000410922 110 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 SNORD83.1-201ENST00000411362 77 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 RNU6-902P-201ENST00000517212 91 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 AL137847.3-201ENST00000611521 109 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
NPAS3Q8IXF0 MIR1185-1-201ENST00000408598 86 ntBASIC2.28□□□□□ -2.04
NPAS3Q8IXF0 SUMO1P4-201ENST00000429430 302 ntBASIC2.28□□□□□ -2.04
NPAS3Q8IXF0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
NPAS3Q8IXF0 SNORA31.11-201ENST00000516528 139 ntBASIC2.28□□□□□ -2.04
NPAS3Q8IXF0 MIR5194-201ENST00000582634 120 ntBASIC2.28□□□□□ -2.04
NPAS3Q8IXF0 DLEU2_4.2-201ENST00000616613 58 ntBASIC2.28□□□□□ -2.04
NPAS3Q8IXF0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNU6-302P-201ENST00000365249 107 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNU1-51P-201ENST00000365345 176 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNU6-360P-201ENST00000390944 104 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 HMGN2P23-201ENST00000456759 269 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNU7-24P-201ENST00000458867 62 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNA5SP200-201ENST00000516360 103 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNU6-656P-201ENST00000516785 107 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNU6-548P-201ENST00000517083 115 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 RNA5SP402-201ENST00000517148 110 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 MIR7111-201ENST00000619751 72 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 MIR6132-201ENST00000622083 109 ntBASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
NPAS3Q8IXF0 MIR103A2-201ENST00000362154 78 ntBASIC2.26□□□□□ -2.05
NPAS3Q8IXF0 RNU6-54P-201ENST00000365563 107 ntBASIC2.26□□□□□ -2.05
NPAS3Q8IXF0 RNU6-260P-201ENST00000384092 107 ntBASIC2.26□□□□□ -2.05
NPAS3Q8IXF0 RNU6-535P-201ENST00000384722 107 ntBASIC2.26□□□□□ -2.05
NPAS3Q8IXF0 MIR194-1-201ENST00000384892 85 ntBASIC2.26□□□□□ -2.05
NPAS3Q8IXF0 AC106800.4-201ENST00000614905 153 ntBASIC2.26□□□□□ -2.05
NPAS3Q8IXF0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
NPAS3Q8IXF0 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.25□□□□□ -2.05
NPAS3Q8IXF0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
NPAS3Q8IXF0 MIR377-201ENST00000362145 69 ntBASIC2.25□□□□□ -2.05
NPAS3Q8IXF0 RNU6-35P-201ENST00000384530 107 ntBASIC2.25□□□□□ -2.05
NPAS3Q8IXF0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC2.25□□□□□ -2.05
NPAS3Q8IXF0 AL353997.5-201ENST00000618886 171 ntBASIC2.25□□□□□ -2.05
NPAS3Q8IXF0 AC025033.1-201ENST00000463883 194 ntBASIC2.24□□□□□ -2.05
NPAS3Q8IXF0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.24□□□□□ -2.05
NPAS3Q8IXF0 RNA5SP82-201ENST00000516707 92 ntBASIC2.24□□□□□ -2.05
NPAS3Q8IXF0 uc_338.10-201ENST00000621872 182 ntBASIC2.24□□□□□ -2.05
NPAS3Q8IXF0 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
NPAS3Q8IXF0 AC080100.1-201ENST00000624239 5356 ntBASIC2.24□□□□□ -2.05
NPAS3Q8IXF0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
NPAS3Q8IXF0 Y_RNA.164-201ENST00000363709 102 ntBASIC2.23□□□□□ -2.05
NPAS3Q8IXF0 MIR144-201ENST00000384886 86 ntBASIC2.23□□□□□ -2.05
NPAS3Q8IXF0 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.23□□□□□ -2.05
NPAS3Q8IXF0 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.23□□□□□ -2.05
NPAS3Q8IXF0 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 RNU6-990P-201ENST00000364385 104 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 SNORA67.1-201ENST00000364749 141 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 RNU6-580P-201ENST00000365159 107 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 AC055731.1-201ENST00000474387 401 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 RNU7-13P-201ENST00000516413 62 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 RNU6-765P-201ENST00000516916 99 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 MIR548AG2-201ENST00000581228 64 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
NPAS3Q8IXF0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC2.21□□□□□ -2.06
NPAS3Q8IXF0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
NPAS3Q8IXF0 SNORD115-44-201ENST00000365391 82 ntBASIC2.21□□□□□ -2.06
NPAS3Q8IXF0 SNORD42B-201ENST00000458893 67 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 348.8 ms