Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RNU6-1088P-201ENST00000516850 104 ntBASIC-2.78□□□□□ -2.85
SCAPERQ9BY12 AL365205.2-201ENST00000594586 68 ntBASIC-2.78□□□□□ -2.85
SCAPERQ9BY12 MIR376B-201ENST00000614515 100 ntBASIC-2.78□□□□□ -2.85
SCAPERQ9BY12 AF246928.1-201ENST00000623768 87 ntBASIC-2.78□□□□□ -2.85
SCAPERQ9BY12 RNU6-664P-201ENST00000362381 107 ntBASIC-2.79□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.79□□□□□ -2.86
SCAPERQ9BY12 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.79□□□□□ -2.86
SCAPERQ9BY12 RNU6-273P-201ENST00000516937 96 ntBASIC-2.79□□□□□ -2.86
SCAPERQ9BY12 AP002795.1-201ENST00000534879 84 ntBASIC-2.79□□□□□ -2.86
SCAPERQ9BY12 AC009779.6-201ENST00000603972 165 ntBASIC-2.79□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.525-201ENST00000384570 113 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 RNU6-311P-201ENST00000516224 102 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 RNU6-864P-201ENST00000516256 108 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 MIR4528-201ENST00000577763 90 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 MIR4696-201ENST00000581431 70 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 AC073114.1-201ENST00000612027 490 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 AC007485.1-201ENST00000616755 206 ntBASIC-2.8□□□□□ -2.86
SCAPERQ9BY12 RNU6-1290P-201ENST00000362957 109 ntBASIC-2.81□□□□□ -2.86
SCAPERQ9BY12 RNU6-841P-201ENST00000383872 107 ntBASIC-2.81□□□□□ -2.86
SCAPERQ9BY12 RNU6-1307P-201ENST00000391012 103 ntBASIC-2.81□□□□□ -2.86
SCAPERQ9BY12 U3.27-201ENST00000391237 200 ntBASIC-2.81□□□□□ -2.86
SCAPERQ9BY12 AC019235.1-201ENST00000503847 207 ntBASIC-2.81□□□□□ -2.86
SCAPERQ9BY12 RNU6-764P-201ENST00000516396 105 ntBASIC-2.81□□□□□ -2.86
SCAPERQ9BY12 Z69908.1-201ENST00000622603 247 ntBASIC-2.81□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.157-201ENST00000363638 102 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 RNU6-957P-201ENST00000363652 99 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.409-201ENST00000383990 98 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 RNU4-69P-201ENST00000410677 143 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.691-201ENST00000516611 103 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 RNU6-307P-201ENST00000516743 106 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 MIR4790-201ENST00000577799 79 ntBASIC-2.82□□□□□ -2.86
SCAPERQ9BY12 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.299-201ENST00000364973 94 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.400-201ENST00000383963 111 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 MIR181A1-201ENST00000385026 110 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 RNU6-1228P-201ENST00000391014 107 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 SEPT14P3-201ENST00000439401 183 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 AL732372.2-207ENST00000445840 183 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 SEPT14P2-201ENST00000453405 183 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 RNU6-559P-201ENST00000516151 98 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 FO082796.1-201ENST00000523795 183 ntBASIC-2.83□□□□□ -2.86
SCAPERQ9BY12 RNU6-647P-201ENST00000364243 107 ntBASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 RNU6-728P-201ENST00000365375 104 ntBASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 RNU6-1013P-201ENST00000384180 107 ntBASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.521-201ENST00000384560 114 ntBASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 MT-TH-201ENST00000387441 69 ntBASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.613-201ENST00000410726 97 ntBASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-2.84□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.360-201ENST00000365512 102 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.528-201ENST00000384575 108 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 RNU6-935P-201ENST00000410371 100 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 AC113618.1-201ENST00000416747 285 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 RNU6-1016P-201ENST00000516689 94 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.698-201ENST00000516798 118 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 RNU6-1149P-201ENST00000516810 97 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 Y_RNA.708-201ENST00000516950 96 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 RNU6-232P-201ENST00000517144 64 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 AC090617.8-201ENST00000623339 167 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 MIR5683-201ENST00000636514 76 ntBASIC-2.85□□□□□ -2.86
SCAPERQ9BY12 RNY3P11-201ENST00000364153 102 ntBASIC-2.85□□□□□ -2.87
SCAPERQ9BY12 RNU6-593P-201ENST00000364716 112 ntBASIC-2.85□□□□□ -2.87
SCAPERQ9BY12 RNU6-332P-201ENST00000391193 108 ntBASIC-2.85□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.622-201ENST00000411091 108 ntBASIC-2.85□□□□□ -2.87
SCAPERQ9BY12 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-2.86□□□□□ -2.87
SCAPERQ9BY12 RNU6-507P-201ENST00000516045 100 ntBASIC-2.86□□□□□ -2.87
SCAPERQ9BY12 RNU6-911P-201ENST00000516523 104 ntBASIC-2.86□□□□□ -2.87
SCAPERQ9BY12 MIR3123-201ENST00000583417 75 ntBASIC-2.86□□□□□ -2.87
SCAPERQ9BY12 RNU6-845P-201ENST00000362578 103 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 RNU6-235P-201ENST00000362644 107 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 RNU6-1085P-201ENST00000363576 107 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 SNORD77B-201ENST00000391112 67 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 PMCHL1-202ENST00000423102 261 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 RNU7-125P-201ENST00000458760 62 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 RNU7-169P-201ENST00000459456 61 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 AC082651.2-201ENST00000496833 166 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 RNU7-4P-201ENST00000516961 62 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 MIR3915-201ENST00000578518 97 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 AC006006.1-201ENST00000603082 144 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.772-201ENST00000606692 102 ntBASIC-2.87□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.357-201ENST00000365487 109 ntBASIC-2.88□□□□□ -2.87
SCAPERQ9BY12 SNORD63-201ENST00000384262 68 ntBASIC-2.88□□□□□ -2.87
SCAPERQ9BY12 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-2.88□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.88□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.605-201ENST00000410577 105 ntBASIC-2.88□□□□□ -2.87
SCAPERQ9BY12 AC107399.1-201ENST00000451226 265 ntBASIC-2.88□□□□□ -2.87
SCAPERQ9BY12 C8orf59P2-201ENST00000603441 271 ntBASIC-2.88□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.389-201ENST00000383924 113 ntBASIC-2.89□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.482-201ENST00000384377 111 ntBASIC-2.89□□□□□ -2.87
SCAPERQ9BY12 RNU6-1129P-201ENST00000515964 104 ntBASIC-2.89□□□□□ -2.87
SCAPERQ9BY12 RNU2-35P-201ENST00000516446 142 ntBASIC-2.89□□□□□ -2.87
SCAPERQ9BY12 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.89□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.24-201ENST00000362508 103 ntBASIC-2.9□□□□□ -2.87
SCAPERQ9BY12 RNU4-17P-201ENST00000365598 141 ntBASIC-2.9□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.424-201ENST00000384063 103 ntBASIC-2.9□□□□□ -2.87
SCAPERQ9BY12 SNORD19-201ENST00000391191 68 ntBASIC-2.9□□□□□ -2.87
SCAPERQ9BY12 SNORA26.8-201ENST00000391306 124 ntBASIC-2.9□□□□□ -2.87
Retrieved 100 of 98,524 protein–RNA pairs in 263 ms