Protein–RNA interactions for Protein: Q96HJ5

MS4A3, Membrane-spanning 4-domains subfamily A member 3, humanhuman

Predictions only

Length 214 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MS4A3Q96HJ5 RNA5SP229-201ENST00000410809 99 ntBASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 RNU1-123P-201ENST00000458950 160 ntBASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 RNA5SP217-201ENST00000515959 91 ntBASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 SNORA31.25-201ENST00000517242 134 ntBASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 AC019176.1-201ENST00000518519 225 ntBASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 AC067863.3-201ENST00000624172 122 ntBASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.82□□□□□ -1.96
MS4A3Q96HJ5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.81□□□□□ -1.96
MS4A3Q96HJ5 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.81□□□□□ -1.96
MS4A3Q96HJ5 Y_RNA.246-201ENST00000364495 108 ntBASIC2.81□□□□□ -1.96
MS4A3Q96HJ5 RNU6-439P-201ENST00000384188 106 ntBASIC2.81□□□□□ -1.96
MS4A3Q96HJ5 RNU6-994P-201ENST00000410507 111 ntBASIC2.81□□□□□ -1.96
MS4A3Q96HJ5 RNU7-40P-201ENST00000516397 64 ntBASIC2.81□□□□□ -1.96
MS4A3Q96HJ5 MIR5680-201ENST00000577577 84 ntBASIC2.81□□□□□ -1.96
MS4A3Q96HJ5 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
MS4A3Q96HJ5 Y_RNA.224-201ENST00000364308 111 ntBASIC2.8□□□□□ -1.96
MS4A3Q96HJ5 U8.9-201ENST00000365667 134 ntBASIC2.8□□□□□ -1.96
MS4A3Q96HJ5 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
MS4A3Q96HJ5 MIR2682-201ENST00000580305 110 ntBASIC2.8□□□□□ -1.96
MS4A3Q96HJ5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
MS4A3Q96HJ5 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 SNORD111-201ENST00000408139 94 ntBASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 UQCRHP3-201ENST00000451503 251 ntBASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 AC108210.2-201ENST00000503681 201 ntBASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 SNORA77B-201ENST00000578179 125 ntBASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 MIR7110-201ENST00000612638 86 ntBASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MS4A3Q96HJ5 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
MS4A3Q96HJ5 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
MS4A3Q96HJ5 SNORA38.1-201ENST00000364172 131 ntBASIC2.78□□□□□ -1.96
MS4A3Q96HJ5 snoU13.13-201ENST00000458842 104 ntBASIC2.78□□□□□ -1.96
MS4A3Q96HJ5 AL359821.1-201ENST00000605519 182 ntBASIC2.78□□□□□ -1.96
MS4A3Q96HJ5 Y_RNA.125-201ENST00000363371 111 ntBASIC2.77□□□□□ -1.97
MS4A3Q96HJ5 MIR887-201ENST00000401258 79 ntBASIC2.77□□□□□ -1.97
MS4A3Q96HJ5 RN7SL863P-201ENST00000462370 296 ntBASIC2.77□□□□□ -1.97
MS4A3Q96HJ5 MIR4460-201ENST00000577862 86 ntBASIC2.77□□□□□ -1.97
MS4A3Q96HJ5 MIR3651-201ENST00000630427 90 ntBASIC2.77□□□□□ -1.97
MS4A3Q96HJ5 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 SNORA6-201ENST00000384033 151 ntBASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 RNU6-724P-201ENST00000390958 105 ntBASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 RN7SL499P-201ENST00000481141 276 ntBASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 RNU4ATAC4P-201ENST00000516307 126 ntBASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 MIR4804-201ENST00000581683 73 ntBASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.76□□□□□ -1.97
MS4A3Q96HJ5 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 RNU6-247P-201ENST00000362636 107 ntBASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 Y_RNA.325-201ENST00000365171 122 ntBASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 SNORA40B-201ENST00000385573 128 ntBASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 RNU1-119P-201ENST00000391122 165 ntBASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 MIR6733-201ENST00000635723 61 ntBASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MS4A3Q96HJ5 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 RNA5SP374-201ENST00000362939 125 ntBASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 SNORA33.1-201ENST00000364957 130 ntBASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 RNU4-47P-201ENST00000410876 114 ntBASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 Y_RNA.633-201ENST00000459107 95 ntBASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 SNORA70.24-201ENST00000517233 118 ntBASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 AL161756.2-201ENST00000604597 246 ntBASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
MS4A3Q96HJ5 SNORD116-16-201ENST00000384533 92 ntBASIC2.73□□□□□ -1.97
MS4A3Q96HJ5 RN7SL633P-201ENST00000488974 297 ntBASIC2.73□□□□□ -1.97
MS4A3Q96HJ5 MIR5004-201ENST00000579078 107 ntBASIC2.73□□□□□ -1.97
MS4A3Q96HJ5 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 SNORD56.5-201ENST00000364281 72 ntBASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 SNORA11.1-201ENST00000408133 129 ntBASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 RNU7-56P-201ENST00000458744 62 ntBASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 SNORA31.2-201ENST00000516019 134 ntBASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
MS4A3Q96HJ5 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 SNORA7.4-201ENST00000384249 137 ntBASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 MIR491-201ENST00000384877 84 ntBASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 SNORD67-201ENST00000390833 111 ntBASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 SNORD41.1-201ENST00000391000 69 ntBASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 RNA5SP212-201ENST00000391223 107 ntBASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 MIR8057-201ENST00000620957 69 ntBASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
MS4A3Q96HJ5 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
MS4A3Q96HJ5 SNORD15B-201ENST00000384714 146 ntBASIC2.7□□□□□ -1.98
MS4A3Q96HJ5 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
MS4A3Q96HJ5 MIR3200-201ENST00000580767 85 ntBASIC2.7□□□□□ -1.98
MS4A3Q96HJ5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
MS4A3Q96HJ5 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
MS4A3Q96HJ5 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
MS4A3Q96HJ5 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms