Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR4528-201ENST00000577763 90 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 AC006006.1-201ENST00000603082 144 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU6-79P-201ENST00000362511 107 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU4-17P-201ENST00000365598 141 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 Y_RNA.414-201ENST00000384011 101 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 SEPT14P3-201ENST00000439401 183 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 AL732372.2-207ENST00000445840 183 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 SEPT14P2-201ENST00000453405 183 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU7-88P-201ENST00000458752 63 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU2-35P-201ENST00000516446 142 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU6-453P-201ENST00000516819 85 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 FO082796.1-201ENST00000523795 183 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 AC120024.2-201ENST00000576526 175 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 TRDV1-202ENST00000621643 102 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 AC090617.8-201ENST00000623339 167 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 Y_RNA.542-201ENST00000384641 111 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 MIR181A1-201ENST00000385026 110 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 RNU6-762P-201ENST00000517107 102 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 RNU6-845P-201ENST00000362578 103 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 SNORD113-6-201ENST00000363345 75 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 SNORD63-201ENST00000384262 68 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 Y_RNA.462-201ENST00000384268 102 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 MIR451A-201ENST00000385059 72 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 RNU6-258P-201ENST00000390884 101 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-1.63□□□□□ -2.67
USF3Q68DE3 AL009048.1-201ENST00000450437 298 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.63□□□□□ -2.67
USF3Q68DE3 RNU7-2P-201ENST00000516096 62 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 DEFB117-201ENST00000602356 141 ntBASIC-1.63□□□□□ -2.67
USF3Q68DE3 MIR526A2-201ENST00000390198 65 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 Y_RNA.618-201ENST00000410949 107 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 RNU4-88P-201ENST00000411220 86 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 FGF7P4-201ENST00000509595 295 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 AC144568.1-201ENST00000520139 137 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 MIR4696-201ENST00000581431 70 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 AC005014.2-201ENST00000607795 599 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 MIR367-201ENST00000362299 68 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 RNU6-102P-201ENST00000384485 104 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 SNRPGP8-201ENST00000454064 226 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 RNU7-110P-201ENST00000516891 62 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 RNU6-570P-201ENST00000517051 105 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 Z69908.1-201ENST00000622603 247 ntBASIC-1.64□□□□□ -2.67
USF3Q68DE3 Y_RNA.615-201ENST00000410769 117 ntBASIC-1.65□□□□□ -2.67
USF3Q68DE3 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.65□□□□□ -2.67
USF3Q68DE3 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.65□□□□□ -2.67
USF3Q68DE3 RNU6-495P-201ENST00000362995 107 ntBASIC-1.66□□□□□ -2.67
USF3Q68DE3 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.66□□□□□ -2.67
USF3Q68DE3 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.66□□□□□ -2.67
USF3Q68DE3 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.66□□□□□ -2.67
USF3Q68DE3 MIR628-201ENST00000385229 95 ntBASIC-1.66□□□□□ -2.67
USF3Q68DE3 AC138907.4-201ENST00000570107 226 ntBASIC-1.66□□□□□ -2.67
USF3Q68DE3 AC018645.2-201ENST00000609151 472 ntBASIC-1.66□□□□□ -2.67
USF3Q68DE3 RNU6-553P-201ENST00000364047 96 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 Y_RNA.222-201ENST00000364264 102 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 RNU5A-2P-201ENST00000384337 116 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 SNORD77B-201ENST00000391112 67 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 AC107399.1-201ENST00000451226 265 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 AC108081.1-201ENST00000604358 221 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 DLEU2_2.2-201ENST00000615474 90 ntBASIC-1.66□□□□□ -2.68
USF3Q68DE3 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 RNU6-1228P-201ENST00000391014 107 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 Y_RNA.594-201ENST00000410373 140 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 RNU6-764P-201ENST00000516396 105 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 Y_RNA.380-201ENST00000365663 111 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-1.67□□□□□ -2.68
USF3Q68DE3 SNORA79-201ENST00000408376 140 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 RNU4-69P-201ENST00000410677 143 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 RNU6-373P-201ENST00000411247 98 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 RNU7-24P-201ENST00000458867 62 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 RNU6-835P-201ENST00000516974 104 ntBASIC-1.67□□□□□ -2.68
USF3Q68DE3 SNORD115-22-201ENST00000364456 82 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 RNU6-690P-201ENST00000365242 106 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 AC009161.1-201ENST00000417306 376 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 RNU7-154P-201ENST00000516194 62 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 RNU6-307P-201ENST00000516743 106 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 AC084781.2-201ENST00000615568 161 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 Y_RNA.418-201ENST00000384029 102 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-1.68□□□□□ -2.68
USF3Q68DE3 MIR1255B2-201ENST00000408618 67 ntBASIC-1.68□□□□□ -2.68
USF3Q68DE3 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.69□□□□□ -2.68
USF3Q68DE3 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.69□□□□□ -2.68
USF3Q68DE3 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.69□□□□□ -2.68
USF3Q68DE3 MRPS35P2-201ENST00000508242 191 ntBASIC-1.69□□□□□ -2.68
USF3Q68DE3 RNU6-1299P-201ENST00000516316 100 ntBASIC-1.69□□□□□ -2.68
USF3Q68DE3 MIR624-201ENST00000385217 97 ntBASIC-1.7□□□□□ -2.68
USF3Q68DE3 MTATP6P19-201ENST00000413797 659 ntBASIC-1.7□□□□□ -2.68
USF3Q68DE3 RNU6-191P-201ENST00000516295 94 ntBASIC-1.7□□□□□ -2.68
USF3Q68DE3 SNORA75-201ENST00000384158 137 ntBASIC-1.7□□□□□ -2.68
USF3Q68DE3 SNORD42B-201ENST00000458893 67 ntBASIC-1.7□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms