Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 RNU6-495P-201ENST00000362995 107 ntBASIC3.92□□□□□ -1.78
NCBP3Q53F19 SNORA71.1-201ENST00000364523 117 ntBASIC3.92□□□□□ -1.78
NCBP3Q53F19 RNU6-364P-201ENST00000384387 107 ntBASIC3.92□□□□□ -1.78
NCBP3Q53F19 RNU7-24P-201ENST00000458867 62 ntBASIC3.92□□□□□ -1.78
NCBP3Q53F19 RNU7-13P-201ENST00000516413 62 ntBASIC3.92□□□□□ -1.78
NCBP3Q53F19 AL359851.1-201ENST00000569460 4997 ntBASIC3.92□□□□□ -1.78
NCBP3Q53F19 AC244505.6-201ENST00000452829 130 ntBASIC3.91□□□□□ -1.78
NCBP3Q53F19 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
NCBP3Q53F19 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.9□□□□□ -1.79
NCBP3Q53F19 AL137790.1-201ENST00000634283 177 ntBASIC3.9□□□□□ -1.79
NCBP3Q53F19 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.9□□□□□ -1.79
NCBP3Q53F19 SCARNA21.1-201ENST00000515996 128 ntBASIC3.89□□□□□ -1.79
NCBP3Q53F19 RNU1-41P-201ENST00000516161 162 ntBASIC3.89□□□□□ -1.79
NCBP3Q53F19 RNU1-48P-201ENST00000516400 162 ntBASIC3.89□□□□□ -1.79
NCBP3Q53F19 AL773524.1-201ENST00000614065 229 ntBASIC3.89□□□□□ -1.79
NCBP3Q53F19 MIR8074-201ENST00000615081 81 ntBASIC3.89□□□□□ -1.79
NCBP3Q53F19 RNU6-645P-201ENST00000364649 106 ntBASIC3.88□□□□□ -1.79
NCBP3Q53F19 COTL1P1-201ENST00000422309 375 ntBASIC3.88□□□□□ -1.79
NCBP3Q53F19 RPS29P6-201ENST00000438196 145 ntBASIC3.88□□□□□ -1.79
NCBP3Q53F19 AC036111.3-201ENST00000526389 112 ntBASIC3.88□□□□□ -1.79
NCBP3Q53F19 MIR6895-201ENST00000613497 78 ntBASIC3.88□□□□□ -1.79
NCBP3Q53F19 MIR6852-201ENST00000621699 66 ntBASIC3.88□□□□□ -1.79
NCBP3Q53F19 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NCBP3Q53F19 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
NCBP3Q53F19 MIR422A-201ENST00000362286 90 ntBASIC3.87□□□□□ -1.79
NCBP3Q53F19 RNU6-446P-201ENST00000362827 106 ntBASIC3.87□□□□□ -1.79
NCBP3Q53F19 MIR17-201ENST00000385012 84 ntBASIC3.87□□□□□ -1.79
NCBP3Q53F19 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.87□□□□□ -1.79
NCBP3Q53F19 MIR4676-201ENST00000583078 72 ntBASIC3.87□□□□□ -1.79
NCBP3Q53F19 SNORA9.2-201ENST00000365361 133 ntBASIC3.86□□□□□ -1.79
NCBP3Q53F19 AL513328.1-201ENST00000446460 224 ntBASIC3.86□□□□□ -1.79
NCBP3Q53F19 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
NCBP3Q53F19 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.85□□□□□ -1.79
NCBP3Q53F19 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
NCBP3Q53F19 RNU6-808P-201ENST00000391233 108 ntBASIC3.84□□□□□ -1.79
NCBP3Q53F19 RPS26P5-201ENST00000418544 335 ntBASIC3.84□□□□□ -1.79
NCBP3Q53F19 AC019176.1-201ENST00000518519 225 ntBASIC3.84□□□□□ -1.79
NCBP3Q53F19 MIR548AG2-201ENST00000581228 64 ntBASIC3.84□□□□□ -1.79
NCBP3Q53F19 RNU6-936P-201ENST00000384005 107 ntBASIC3.83□□□□□ -1.8
NCBP3Q53F19 RNA5SP299-201ENST00000391203 116 ntBASIC3.83□□□□□ -1.8
NCBP3Q53F19 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
NCBP3Q53F19 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NCBP3Q53F19 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.82□□□□□ -1.8
NCBP3Q53F19 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.82□□□□□ -1.8
NCBP3Q53F19 MIR216B-201ENST00000390186 82 ntBASIC3.82□□□□□ -1.8
NCBP3Q53F19 UBE2DNL-203ENST00000474922 222 ntBASIC3.82□□□□□ -1.8
NCBP3Q53F19 RPL23AP94-201ENST00000512518 302 ntBASIC3.82□□□□□ -1.8
NCBP3Q53F19 RNU7-40P-201ENST00000516397 64 ntBASIC3.82□□□□□ -1.8
NCBP3Q53F19 MIR3657-201ENST00000584818 117 ntBASIC3.82□□□□□ -1.8
NCBP3Q53F19 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.82□□□□□ -1.8
NCBP3Q53F19 AC027335.2-201ENST00000624030 375 ntBASIC3.82□□□□□ -1.8
NCBP3Q53F19 RNU6-1126P-201ENST00000384002 107 ntBASIC3.81□□□□□ -1.8
NCBP3Q53F19 MIR938-201ENST00000401216 83 ntBASIC3.81□□□□□ -1.8
NCBP3Q53F19 AL359511.1-201ENST00000402970 211 ntBASIC3.81□□□□□ -1.8
NCBP3Q53F19 RNU7-102P-201ENST00000458948 62 ntBASIC3.81□□□□□ -1.8
NCBP3Q53F19 MIR4298-201ENST00000584380 73 ntBASIC3.81□□□□□ -1.8
NCBP3Q53F19 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NCBP3Q53F19 AC080100.1-201ENST00000624239 5356 ntBASIC3.8□□□□□ -1.8
NCBP3Q53F19 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.8□□□□□ -1.8
NCBP3Q53F19 RNA5SP233-201ENST00000459153 113 ntBASIC3.8□□□□□ -1.8
NCBP3Q53F19 MIR5694-201ENST00000581190 76 ntBASIC3.8□□□□□ -1.8
NCBP3Q53F19 MIR6840-201ENST00000611937 71 ntBASIC3.8□□□□□ -1.8
NCBP3Q53F19 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NCBP3Q53F19 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
NCBP3Q53F19 Y_RNA.500-201ENST00000384466 111 ntBASIC3.79□□□□□ -1.8
NCBP3Q53F19 SNORA44-201ENST00000384584 132 ntBASIC3.79□□□□□ -1.8
NCBP3Q53F19 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.79□□□□□ -1.8
NCBP3Q53F19 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
NCBP3Q53F19 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
NCBP3Q53F19 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NCBP3Q53F19 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NCBP3Q53F19 SNORD115-24-201ENST00000363528 82 ntBASIC3.77□□□□□ -1.81
NCBP3Q53F19 RNU6-54P-201ENST00000365563 107 ntBASIC3.77□□□□□ -1.81
NCBP3Q53F19 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.77□□□□□ -1.81
NCBP3Q53F19 AC022018.1-201ENST00000430685 241 ntBASIC3.76□□□□□ -1.81
NCBP3Q53F19 RNU6-165P-201ENST00000517170 99 ntBASIC3.76□□□□□ -1.81
NCBP3Q53F19 AC023827.1-201ENST00000569247 97 ntBASIC3.76□□□□□ -1.81
NCBP3Q53F19 MIR7106-201ENST00000612419 65 ntBASIC3.76□□□□□ -1.81
NCBP3Q53F19 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
NCBP3Q53F19 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
NCBP3Q53F19 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
NCBP3Q53F19 SNORA5B-201ENST00000363786 132 ntBASIC3.75□□□□□ -1.81
NCBP3Q53F19 RNU6-260P-201ENST00000384092 107 ntBASIC3.75□□□□□ -1.81
NCBP3Q53F19 MIR512-1-201ENST00000384913 84 ntBASIC3.75□□□□□ -1.81
NCBP3Q53F19 MIR4299-201ENST00000577899 72 ntBASIC3.75□□□□□ -1.81
NCBP3Q53F19 MIR4713-201ENST00000582691 75 ntBASIC3.75□□□□□ -1.81
NCBP3Q53F19 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.75□□□□□ -1.81
NCBP3Q53F19 SNORD111-201ENST00000408139 94 ntBASIC3.74□□□□□ -1.81
NCBP3Q53F19 MIR3938-201ENST00000582157 103 ntBASIC3.74□□□□□ -1.81
NCBP3Q53F19 MIR548O2-201ENST00000616090 70 ntBASIC3.74□□□□□ -1.81
NCBP3Q53F19 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
NCBP3Q53F19 MIR26A1-201ENST00000362205 77 ntBASIC3.73□□□□□ -1.81
NCBP3Q53F19 SNORD113-4-201ENST00000364802 75 ntBASIC3.73□□□□□ -1.81
NCBP3Q53F19 AC079140.2-201ENST00000506193 142 ntBASIC3.73□□□□□ -1.81
NCBP3Q53F19 SNORA44.1-201ENST00000517031 108 ntBASIC3.73□□□□□ -1.81
NCBP3Q53F19 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NCBP3Q53F19 SNORD1A-201ENST00000364968 72 ntBASIC3.72□□□□□ -1.81
NCBP3Q53F19 MIR617-201ENST00000385030 97 ntBASIC3.72□□□□□ -1.81
NCBP3Q53F19 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
NCBP3Q53F19 SNORA75.2-201ENST00000391138 150 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms