Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC2.56□□□□□ -2
NPAS3Q8IXF0 RNU6-1054P-201ENST00000411293 104 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 RNA5SP492-201ENST00000411330 114 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 MTND4LP1-201ENST00000446263 157 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 RNA5SP137-201ENST00000516833 135 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 MIR4648-201ENST00000580107 72 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 uc_338.6-201ENST00000613544 171 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NPAS3Q8IXF0 MIR101-2-201ENST00000362195 79 ntBASIC2.55□□□□□ -2
NPAS3Q8IXF0 RNU6-403P-201ENST00000363163 104 ntBASIC2.55□□□□□ -2
NPAS3Q8IXF0 RNU6-1335P-201ENST00000365426 107 ntBASIC2.55□□□□□ -2
NPAS3Q8IXF0 RNA5SP210-201ENST00000391034 120 ntBASIC2.55□□□□□ -2
NPAS3Q8IXF0 AL356320.1-201ENST00000429616 163 ntBASIC2.55□□□□□ -2
NPAS3Q8IXF0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
NPAS3Q8IXF0 AC015688.6-201ENST00000577737 104 ntBASIC2.55□□□□□ -2
NPAS3Q8IXF0 MIR4524B-201ENST00000581569 115 ntBASIC2.55□□□□□ -2
NPAS3Q8IXF0 Y_RNA.258-201ENST00000364613 105 ntBASIC2.54□□□□□ -2
NPAS3Q8IXF0 SNORA16B-201ENST00000364674 135 ntBASIC2.54□□□□□ -2
NPAS3Q8IXF0 RNU1-91P-201ENST00000364746 163 ntBASIC2.54□□□□□ -2
NPAS3Q8IXF0 AC046143.2-201ENST00000609789 160 ntBASIC2.54□□□□□ -2
NPAS3Q8IXF0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NPAS3Q8IXF0 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.54□□□□□ -2
NPAS3Q8IXF0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2
NPAS3Q8IXF0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
NPAS3Q8IXF0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
NPAS3Q8IXF0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
NPAS3Q8IXF0 RNA5SP456-201ENST00000364002 114 ntBASIC2.53□□□□□ -2
NPAS3Q8IXF0 RNU6-1177P-201ENST00000391058 104 ntBASIC2.53□□□□□ -2
NPAS3Q8IXF0 UBBP3-201ENST00000445497 241 ntBASIC2.53□□□□□ -2
NPAS3Q8IXF0 Z96811.1-201ENST00000445880 108 ntBASIC2.53□□□□□ -2
NPAS3Q8IXF0 RNU7-62P-201ENST00000458856 62 ntBASIC2.53□□□□□ -2
NPAS3Q8IXF0 AC013244.2-201ENST00000603396 103 ntBASIC2.53□□□□□ -2
NPAS3Q8IXF0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.53□□□□□ -2
NPAS3Q8IXF0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 SNORD56.5-201ENST00000364281 72 ntBASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 MIR29C-201ENST00000385231 88 ntBASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 SNORD93-201ENST00000408813 74 ntBASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 RNU6-935P-201ENST00000410371 100 ntBASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 MIR1273D-201ENST00000577266 86 ntBASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.52□□□□□ -2.01
NPAS3Q8IXF0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 RNU6-1312P-201ENST00000362425 108 ntBASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 SNORA25.3-201ENST00000363205 127 ntBASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 Y_RNA.375-201ENST00000365625 101 ntBASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 HMGN2P3-201ENST00000433603 273 ntBASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 HMGN2P5-201ENST00000436882 273 ntBASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 MIR1291-201ENST00000627649 87 ntBASIC2.51□□□□□ -2.01
NPAS3Q8IXF0 AC016717.2-201ENST00000609089 5141 ntBASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 ZNF355P-201ENST00000427301 3216 ntBASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 Y_RNA.588-201ENST00000391254 102 ntBASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 SCARNA21.1-201ENST00000515996 128 ntBASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 MIR5092-201ENST00000583139 88 ntBASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 AL078603.1-201ENST00000603824 313 ntBASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 AL449363.1-201ENST00000617815 186 ntBASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
NPAS3Q8IXF0 RNU6-1260P-201ENST00000362944 107 ntBASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 MIR203A-201ENST00000384836 110 ntBASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 AC026436.1-201ENST00000510537 270 ntBASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 RNU6-752P-201ENST00000516376 102 ntBASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 Y_RNA.697-201ENST00000516776 113 ntBASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 AP000942.3-201ENST00000603702 160 ntBASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.49□□□□□ -2.01
NPAS3Q8IXF0 RNU6-112P-201ENST00000363599 104 ntBASIC2.48□□□□□ -2.01
NPAS3Q8IXF0 RNU6-396P-201ENST00000365369 105 ntBASIC2.48□□□□□ -2.01
NPAS3Q8IXF0 MIR1289-2-201ENST00000408360 111 ntBASIC2.48□□□□□ -2.01
NPAS3Q8IXF0 SNORD111.1-201ENST00000516421 86 ntBASIC2.48□□□□□ -2.01
NPAS3Q8IXF0 DEFB122-202ENST00000569013 197 ntBASIC2.48□□□□□ -2.01
NPAS3Q8IXF0 MIR548H5-201ENST00000580314 60 ntBASIC2.48□□□□□ -2.01
NPAS3Q8IXF0 MIR3938-201ENST00000582157 103 ntBASIC2.48□□□□□ -2.01
NPAS3Q8IXF0 RNA5SP299-201ENST00000391203 116 ntBASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 MIR1302-7-201ENST00000408841 72 ntBASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 MIR3670-2-201ENST00000582974 65 ntBASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 MIR3670-1-201ENST00000584160 65 ntBASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 MIR3670-3-201ENST00000584855 65 ntBASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 MIR3192-201ENST00000584920 77 ntBASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 MIR3670-4-201ENST00000612260 65 ntBASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.47□□□□□ -2.01
NPAS3Q8IXF0 RNA5SP48-201ENST00000363969 126 ntBASIC2.46□□□□□ -2.02
NPAS3Q8IXF0 MT-TF-201ENST00000387314 71 ntBASIC2.46□□□□□ -2.02
NPAS3Q8IXF0 snoU13.23-201ENST00000458863 104 ntBASIC2.46□□□□□ -2.02
NPAS3Q8IXF0 RNA5SP481-201ENST00000516814 122 ntBASIC2.46□□□□□ -2.02
NPAS3Q8IXF0 MIR3126-201ENST00000577443 74 ntBASIC2.46□□□□□ -2.02
NPAS3Q8IXF0 MIR3920-201ENST00000581751 86 ntBASIC2.46□□□□□ -2.02
NPAS3Q8IXF0 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.46□□□□□ -2.02
NPAS3Q8IXF0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 DEFA7P-201ENST00000382676 285 ntBASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 RNU1-138P-201ENST00000384093 164 ntBASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 MIR764-201ENST00000390811 85 ntBASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 RNU6-322P-201ENST00000516010 103 ntBASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 SNORA31.15-201ENST00000516771 132 ntBASIC2.45□□□□□ -2.02
NPAS3Q8IXF0 MIR4264-201ENST00000583520 66 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 152.9 ms