Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MTND5P40-201ENST00000559945 246 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 MIR3192-201ENST00000584920 77 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.58□□□□□ -2.16
COL4A3Q01955 AL357312.1-201ENST00000603879 298 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 MIR1245B-201ENST00000636115 69 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL4A3Q01955 RNA5SP457-201ENST00000363657 124 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 SNORA67.1-201ENST00000364749 141 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 RNU6-396P-201ENST00000365369 105 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 RNU6-947P-201ENST00000516264 106 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 Y_RNA.685-201ENST00000516532 108 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 SNORD53B-201ENST00000577887 78 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 SNORA77B-201ENST00000578179 125 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 MIR8074-201ENST00000615081 81 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 Z82195.2-201ENST00000612348 18351 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 SNORD38.2-201ENST00000384470 69 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 Y_RNA.567-201ENST00000384736 106 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 MIR34C-201ENST00000384831 77 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
COL4A3Q01955 AC244636.1-201ENST00000421152 228 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 SPINT5P-201ENST00000448174 155 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 RNU1-98P-201ENST00000458992 160 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 RNU6-922P-201ENST00000516753 99 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 GHRLOS.1-201ENST00000610995 70 ntBASIC1.57□□□□□ -2.16
COL4A3Q01955 SNORD116-10-201ENST00000363791 102 ntBASIC1.56□□□□□ -2.16
COL4A3Q01955 RNU6-1307P-201ENST00000391012 103 ntBASIC1.56□□□□□ -2.16
COL4A3Q01955 MIR548G-201ENST00000408442 89 ntBASIC1.56□□□□□ -2.16
COL4A3Q01955 AC027119.1-201ENST00000440877 241 ntBASIC1.56□□□□□ -2.16
COL4A3Q01955 snoU13.2-201ENST00000459201 104 ntBASIC1.56□□□□□ -2.16
COL4A3Q01955 RNU7-137P-201ENST00000516788 62 ntBASIC1.56□□□□□ -2.16
COL4A3Q01955 MIR4287-201ENST00000579398 78 ntBASIC1.56□□□□□ -2.16
COL4A3Q01955 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL4A3Q01955 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
COL4A3Q01955 HSPE1P24-201ENST00000450782 238 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AC022137.1-201ENST00000483735 151 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AL133373.1-201ENST00000497098 94 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AC133485.1-201ENST00000567176 124 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AC141846.1-201ENST00000568348 142 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 MIR4713-201ENST00000582691 75 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AC103810.7-201ENST00000607821 91 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 SNORD78.1-201ENST00000390866 65 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AL354695.1-201ENST00000427935 228 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AC098934.3-201ENST00000430450 190 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 SNORD111.1-201ENST00000516421 86 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 MIR5694-201ENST00000581190 76 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AL627230.5-201ENST00000619807 58 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 AL353770.2-201ENST00000620024 78 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 MIR6767-201ENST00000637302 66 ntBASIC1.55□□□□□ -2.16
COL4A3Q01955 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
COL4A3Q01955 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.54□□□□□ -2.16
COL4A3Q01955 Y_RNA.219-201ENST00000364232 113 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 RNU6-949P-201ENST00000384040 107 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 RNU6-675P-201ENST00000384236 104 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 RNU6-1275P-201ENST00000391087 107 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.54□□□□□ -2.16
COL4A3Q01955 RNU6-267P-201ENST00000516714 103 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 AL662814.1-201ENST00000617364 121 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 AC012676.2-201ENST00000619258 186 ntBASIC1.54□□□□□ -2.16
COL4A3Q01955 SNORA25.3-201ENST00000363205 127 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 RNA5SP48-201ENST00000363969 126 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 RNA5SP363-201ENST00000365072 115 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 RNU6-439P-201ENST00000384188 106 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 RPL39P39-201ENST00000455840 151 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 AC012493.3-201ENST00000604494 112 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 AL161722.3-201ENST00000605789 2983 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 AL096861.1-201ENST00000610899 123 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 AP001362.1-201ENST00000625165 124 ntBASIC1.53□□□□□ -2.16
COL4A3Q01955 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
COL4A3Q01955 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
COL4A3Q01955 SNORA16B-201ENST00000364674 135 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 SNORD41-201ENST00000386967 70 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 MIR1302-7-201ENST00000408841 72 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 AC019176.1-201ENST00000518519 225 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 AC036111.3-201ENST00000526389 112 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 MIR4500-201ENST00000579472 76 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 AC103810.8-201ENST00000607347 118 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.52□□□□□ -2.17
COL4A3Q01955 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL4A3Q01955 RNU6-1125P-201ENST00000363601 107 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 RNU6-1276P-201ENST00000365372 104 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 RNU6-480P-201ENST00000384332 107 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 RNU6-242P-201ENST00000384359 107 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 MIR588-201ENST00000384900 83 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 MIR517C-201ENST00000385103 95 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 RNU6-402P-201ENST00000410678 103 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 Y_RNA.620-201ENST00000411009 88 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 MIR4668-201ENST00000582284 70 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 AP000753.3-201ENST00000604083 169 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 RNY1P2-201ENST00000364820 117 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 SNORD1A-201ENST00000364968 72 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 RNU6-979P-201ENST00000383896 107 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 SNORA31.24-201ENST00000517232 57 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 AC015688.6-201ENST00000577737 104 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 SEPT14P17-201ENST00000617978 177 ntBASIC1.51□□□□□ -2.17
COL4A3Q01955 ZNF209P-201ENST00000593450 2304 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 Y_RNA.173-201ENST00000363776 113 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 RNU6-497P-201ENST00000365316 104 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 RNU6-1124P-201ENST00000384169 107 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 393.6 ms