Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC138749.4-201ENST00000563970 127 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 MIR4781-201ENST00000585250 76 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 MALAT1.1-201ENST00000618249 95 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.38□□□□□ -2.19
HOXA3O43365 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
HOXA3O43365 Y_RNA.342-201ENST00000365352 113 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 SNORA80D-201ENST00000384488 135 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 SNORD93-201ENST00000408813 74 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 BTF3P4-201ENST00000418852 495 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 RNU7-21P-201ENST00000459430 62 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 MIR4419B-201ENST00000577260 68 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 MIR4500-201ENST00000579472 76 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 RNU6-86P-201ENST00000606534 107 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 snoU13.31-201ENST00000607291 104 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 U6.109-201ENST00000636749 87 ntBASIC1.38□□□□□ -2.19
HOXA3O43365 Y_RNA.119-201ENST00000363301 96 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 RNA5SP133-201ENST00000363368 119 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 Y_RNA.220-201ENST00000364244 109 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 RNY1P7-201ENST00000384743 110 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
HOXA3O43365 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 SNORD111-201ENST00000408139 94 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 AC023827.1-201ENST00000569247 97 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 MIR4491-201ENST00000581087 68 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.37□□□□□ -2.19
HOXA3O43365 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.37□□□□□ -2.19
HOXA3O43365 Y_RNA.96-201ENST00000363092 109 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 RNU1-36P-201ENST00000365130 165 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 RNU6-934P-201ENST00000365154 107 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 Y_RNA.567-201ENST00000384736 106 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 SNORA67.5-201ENST00000391036 107 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 RNU4-62P-201ENST00000410125 130 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 SNORD83.1-201ENST00000411362 77 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.36□□□□□ -2.19
HOXA3O43365 SNORD79.1-201ENST00000516069 84 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 Y_RNA.705-201ENST00000516862 110 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 SNORA70.22-201ENST00000517160 124 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 MIR4303-201ENST00000581299 66 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 AC106800.4-201ENST00000614905 153 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 U7.3-201ENST00000616123 62 ntBASIC1.36□□□□□ -2.19
HOXA3O43365 AC023934.1-201ENST00000574529 2389 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 RNU6-294P-201ENST00000364999 102 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 RNU6-813P-201ENST00000384691 107 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 RNU7-185P-201ENST00000459215 60 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 RNU7-90P-201ENST00000459216 62 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 RNU6-162P-201ENST00000516228 103 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 AC090897.1-201ENST00000580909 226 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 MIR7111-201ENST00000619751 72 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 MIR4679-1-201ENST00000637619 75 ntBASIC1.35□□□□□ -2.19
HOXA3O43365 HSBP1P2-201ENST00000299671 229 ntBASIC1.34□□□□□ -2.19
HOXA3O43365 Y_RNA.173-201ENST00000363776 113 ntBASIC1.34□□□□□ -2.19
HOXA3O43365 Y_RNA.290-201ENST00000364879 114 ntBASIC1.34□□□□□ -2.19
HOXA3O43365 RNU6-972P-201ENST00000391208 107 ntBASIC1.34□□□□□ -2.19
HOXA3O43365 Y_RNA.588-201ENST00000391254 102 ntBASIC1.34□□□□□ -2.19
HOXA3O43365 RNU1-98P-201ENST00000458992 160 ntBASIC1.34□□□□□ -2.19
HOXA3O43365 AC008163.1-202ENST00000636004 2889 ntBASIC1.33□□□□□ -2.2
HOXA3O43365 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
HOXA3O43365 RNY1P10-201ENST00000363268 113 ntBASIC1.33□□□□□ -2.2
HOXA3O43365 RNU6-887P-201ENST00000410660 100 ntBASIC1.33□□□□□ -2.2
HOXA3O43365 RNU6-844P-201ENST00000517175 102 ntBASIC1.33□□□□□ -2.2
HOXA3O43365 SNORD53B-201ENST00000577887 78 ntBASIC1.33□□□□□ -2.2
HOXA3O43365 MIR4255-201ENST00000579351 72 ntBASIC1.33□□□□□ -2.2
HOXA3O43365 RNU6-403P-201ENST00000363163 104 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 Y_RNA.118-201ENST00000363300 101 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 Y_RNA.190-201ENST00000363964 101 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 AP1B1P2-201ENST00000416196 106 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 AC015818.7-201ENST00000428754 109 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 AC087499.7-201ENST00000441958 109 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 SNORA25.16-201ENST00000516741 121 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 MIR4771-2-201ENST00000577758 74 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 MIR4771-1-201ENST00000582617 74 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 AC103810.7-201ENST00000607821 91 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 AL512598.1-201ENST00000610158 273 ntBASIC1.32□□□□□ -2.2
HOXA3O43365 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
HOXA3O43365 RNU6-1244P-201ENST00000363614 108 ntBASIC1.31□□□□□ -2.2
HOXA3O43365 SNORD58A-201ENST00000383875 65 ntBASIC1.31□□□□□ -2.2
HOXA3O43365 Y_RNA.508-201ENST00000384502 114 ntBASIC1.31□□□□□ -2.2
HOXA3O43365 MIR1257-201ENST00000408490 117 ntBASIC1.31□□□□□ -2.2
HOXA3O43365 RNU4-83P-201ENST00000410863 133 ntBASIC1.31□□□□□ -2.2
HOXA3O43365 RPS26P5-201ENST00000418544 335 ntBASIC1.31□□□□□ -2.2
HOXA3O43365 RNU6-531P-201ENST00000516694 104 ntBASIC1.31□□□□□ -2.2
HOXA3O43365 RNA5SP327-201ENST00000362494 101 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 RNU4-58P-201ENST00000363192 141 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 SNORA72.6-201ENST00000384520 129 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 RNU6-997P-201ENST00000384725 107 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 MIR499A-201ENST00000384903 122 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 SNORD12-201ENST00000391002 90 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 RNU6-321P-201ENST00000410912 106 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 BX276092.1-201ENST00000427368 251 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 AC026421.1-201ENST00000519101 163 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 AC020891.4-201ENST00000605745 93 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.3□□□□□ -2.2
HOXA3O43365 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.29□□□□□ -2.2
HOXA3O43365 RNU1-42P-201ENST00000364033 160 ntBASIC1.29□□□□□ -2.2
HOXA3O43365 SNORA25.9-201ENST00000365087 128 ntBASIC1.29□□□□□ -2.2
HOXA3O43365 RNU6-53P-201ENST00000365367 106 ntBASIC1.29□□□□□ -2.2
HOXA3O43365 MIR125B2-201ENST00000385128 89 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 199.9 ms