Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 snoU13.2-201ENST00000459201 104 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 AC025033.1-201ENST00000463883 194 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 AC133485.1-201ENST00000567176 124 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 AL773524.1-201ENST00000614065 229 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 MIR6740-201ENST00000618268 113 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 RNU6-1125P-201ENST00000363601 107 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 Y_RNA.313-201ENST00000365095 103 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 RNU6-949P-201ENST00000384040 107 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 MIR588-201ENST00000384900 83 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 RNU6-947P-201ENST00000516264 106 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 RNA5SP395-201ENST00000516567 118 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 AL513043.2-201ENST00000573941 143 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 AC025521.1-201ENST00000621624 286 ntBASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.38□□□□□ -2.03
CHMP3Q9Y3E7 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 WWP1P1-201ENST00000466609 2769 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 Y_RNA.437-201ENST00000384113 113 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 SNORA2B-201ENST00000384583 137 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 RNU6-205P-201ENST00000390858 107 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 AC244636.1-201ENST00000421152 228 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 RNU7-171P-201ENST00000459581 62 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 MIR4299-201ENST00000577899 72 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 uc_338.6-201ENST00000613544 171 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 MIR548BB-201ENST00000626714 66 ntBASIC2.37□□□□□ -2.03
CHMP3Q9Y3E7 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 RNU6-509P-201ENST00000363519 107 ntBASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 SNORD115-27-201ENST00000364430 82 ntBASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 HMGN2P23-201ENST00000456759 269 ntBASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 RNU6-250P-201ENST00000516958 103 ntBASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 AC090897.1-201ENST00000580909 226 ntBASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 AC006160.2-201ENST00000637708 154 ntBASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CHMP3Q9Y3E7 RNA5SP37-201ENST00000365420 130 ntBASIC2.35□□□□□ -2.03
CHMP3Q9Y3E7 SNORD38.2-201ENST00000384470 69 ntBASIC2.35□□□□□ -2.03
CHMP3Q9Y3E7 MIR676-201ENST00000390702 67 ntBASIC2.35□□□□□ -2.03
CHMP3Q9Y3E7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.35□□□□□ -2.03
CHMP3Q9Y3E7 HSPE1P24-201ENST00000450782 238 ntBASIC2.35□□□□□ -2.03
CHMP3Q9Y3E7 AC138749.4-201ENST00000563970 127 ntBASIC2.35□□□□□ -2.03
CHMP3Q9Y3E7 GHRLOS.1-201ENST00000610995 70 ntBASIC2.35□□□□□ -2.03
CHMP3Q9Y3E7 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
CHMP3Q9Y3E7 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
CHMP3Q9Y3E7 MIR563-201ENST00000385080 79 ntBASIC2.34□□□□□ -2.03
CHMP3Q9Y3E7 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.34□□□□□ -2.03
CHMP3Q9Y3E7 SNORA26.9-201ENST00000391322 122 ntBASIC2.34□□□□□ -2.03
CHMP3Q9Y3E7 RNA5SP182-201ENST00000516064 82 ntBASIC2.34□□□□□ -2.03
CHMP3Q9Y3E7 AL357312.1-201ENST00000603879 298 ntBASIC2.34□□□□□ -2.03
CHMP3Q9Y3E7 RNU4-83P-201ENST00000410863 133 ntBASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 AC005908.1-201ENST00000468701 347 ntBASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 RNA5SP364-201ENST00000516938 78 ntBASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 MIR4666B-201ENST00000578142 81 ntBASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 AL353997.5-201ENST00000618886 171 ntBASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 MIR8063-201ENST00000621930 81 ntBASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 U6.109-201ENST00000636749 87 ntBASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CHMP3Q9Y3E7 ZNF355P-201ENST00000427301 3216 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 HSBP1P2-201ENST00000299671 229 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 MIR30D-201ENST00000362283 70 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 RNU6-633P-201ENST00000362612 103 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 RNY1P2-201ENST00000364820 117 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 Y_RNA.426-201ENST00000384068 113 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 RNU6-237P-201ENST00000515985 71 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 MIR4713-201ENST00000582691 75 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 MIR8081-201ENST00000611533 95 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 MIR8074-201ENST00000615081 81 ntBASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CHMP3Q9Y3E7 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 RNU6-396P-201ENST00000365369 105 ntBASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 MIR1185-1-201ENST00000408598 86 ntBASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 RNA5SP95-201ENST00000410319 137 ntBASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 HMGN2P19-201ENST00000425149 265 ntBASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 RPS29P11-201ENST00000496507 171 ntBASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 MIR4500-201ENST00000579472 76 ntBASIC2.31□□□□□ -2.04
CHMP3Q9Y3E7 Y_RNA.168-201ENST00000363740 102 ntBASIC2.3□□□□□ -2.04
CHMP3Q9Y3E7 RNU6-654P-201ENST00000364373 107 ntBASIC2.3□□□□□ -2.04
CHMP3Q9Y3E7 RNU7-62P-201ENST00000458856 62 ntBASIC2.3□□□□□ -2.04
CHMP3Q9Y3E7 AC019176.1-201ENST00000518519 225 ntBASIC2.3□□□□□ -2.04
CHMP3Q9Y3E7 AC084768.2-201ENST00000622736 221 ntBASIC2.3□□□□□ -2.04
CHMP3Q9Y3E7 MIR6516-201ENST00000630554 81 ntBASIC2.3□□□□□ -2.04
CHMP3Q9Y3E7 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
CHMP3Q9Y3E7 RNA5SP133-201ENST00000363368 119 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 MIR9-3-201ENST00000385084 90 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 RNU6-1165P-201ENST00000410119 107 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 AC245517.4-201ENST00000448601 281 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 AP003716.2-201ENST00000528260 108 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 MIR4264-201ENST00000583520 66 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 SNORA4-201ENST00000584302 138 ntBASIC2.29□□□□□ -2.04
CHMP3Q9Y3E7 Y_RNA.244-201ENST00000364484 109 ntBASIC2.28□□□□□ -2.04
CHMP3Q9Y3E7 RNU6-480P-201ENST00000384332 107 ntBASIC2.28□□□□□ -2.04
CHMP3Q9Y3E7 BX276092.1-201ENST00000427368 251 ntBASIC2.28□□□□□ -2.04
CHMP3Q9Y3E7 AP000753.3-201ENST00000604083 169 ntBASIC2.28□□□□□ -2.04
CHMP3Q9Y3E7 AC103810.8-201ENST00000607347 118 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 226.2 ms