Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC112693.2-201ENST00000556538 232 ntBASIC0.13□□□□□ -2.39
VPS54Q9P1Q0 MIR6718-201ENST00000616153 80 ntBASIC0.13□□□□□ -2.39
VPS54Q9P1Q0 Y_RNA.75-201ENST00000362927 97 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 RNU6-508P-201ENST00000363231 103 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 RNY1P11-201ENST00000363759 113 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 RNU6-1229P-201ENST00000364295 107 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 RNU6-574P-201ENST00000384265 107 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 Y_RNA.478-201ENST00000384358 107 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 MIR1302-3-201ENST00000408128 138 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 AL022718.1-201ENST00000412004 84 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 RNU6-1194P-201ENST00000516208 104 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 SCARNA16.5-201ENST00000517114 183 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 MIR4752-201ENST00000579672 72 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 AC062037.2-201ENST00000610137 73 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 MIR6828-201ENST00000636181 60 ntBASIC0.12□□□□□ -2.39
VPS54Q9P1Q0 Y_RNA.120-201ENST00000363304 110 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 RNA5SP133-201ENST00000363368 119 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 RNU4-67P-201ENST00000364569 141 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 Y_RNA.366-201ENST00000365540 102 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 Y_RNA.423-201ENST00000384057 113 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 RNU6-918P-201ENST00000391219 106 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 RNA5SP236-201ENST00000516169 116 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 SCARNA15.1-201ENST00000516384 125 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 SNORA62.5-201ENST00000516634 120 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 AC022559.1-201ENST00000520905 205 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 AL359881.1-201ENST00000602916 267 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 AC023932.2-201ENST00000603176 175 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 AC105081.1-201ENST00000617727 106 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 AC244669.1-204ENST00000621564 178 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 U6.109-201ENST00000636749 87 ntBASIC0.11□□□□□ -2.39
VPS54Q9P1Q0 PCNPP3-201ENST00000393579 471 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 AC108059.2-201ENST00000434626 151 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 AL118496.2-201ENST00000448300 230 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 MIR1270-201ENST00000459320 83 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 RNU4-71P-201ENST00000516258 113 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 RNU2-35P-201ENST00000516446 142 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 RNU6-135P-201ENST00000516769 101 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 MIR548AE2-201ENST00000583456 67 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 MIR4315-1-201ENST00000636800 73 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 MIR4315-2-201ENST00000640925 73 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 AC091304.10-201ENST00000641554 121 ntBASIC0.1□□□□□ -2.39
VPS54Q9P1Q0 MIR330-201ENST00000362196 94 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 SNORD115-2-201ENST00000362842 82 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 RNU4-58P-201ENST00000363192 141 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 SNORD115-20-201ENST00000365099 82 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 RNU6-690P-201ENST00000365242 106 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 RNU6-1232P-201ENST00000516299 86 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 SNORD67.1-201ENST00000516618 108 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 AC138749.4-201ENST00000563970 127 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 MIR4639-201ENST00000584938 69 ntBASIC0.09□□□□□ -2.4
VPS54Q9P1Q0 RNU6-1099P-201ENST00000363533 107 ntBASIC0.08□□□□□ -2.4
VPS54Q9P1Q0 SNORA20.1-201ENST00000364790 130 ntBASIC0.08□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.307-201ENST00000365022 117 ntBASIC0.08□□□□□ -2.4
VPS54Q9P1Q0 RNU6-240P-201ENST00000516098 97 ntBASIC0.08□□□□□ -2.4
VPS54Q9P1Q0 RNU2-60P-201ENST00000517290 128 ntBASIC0.08□□□□□ -2.4
VPS54Q9P1Q0 TUG1_4.1-201ENST00000619464 181 ntBASIC0.08□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.49-201ENST00000362714 112 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.162-201ENST00000363683 102 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 RNU6-716P-201ENST00000365621 103 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.447-201ENST00000384184 113 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.531-201ENST00000384589 121 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.793-201ENST00000411222 111 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 RNU7-129P-201ENST00000516128 62 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 RNU6-1023P-201ENST00000516137 106 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 RNU6-1219P-201ENST00000516143 112 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 RNU7-137P-201ENST00000516788 62 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 MIR4503-201ENST00000582187 83 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 MIR4305-201ENST00000583252 102 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 U4.1-201ENST00000620349 87 ntBASIC0.07□□□□□ -2.4
VPS54Q9P1Q0 MIR101-2-201ENST00000362195 79 ntBASIC0.06□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.205-201ENST00000364128 113 ntBASIC0.06□□□□□ -2.4
VPS54Q9P1Q0 RNU6-818P-201ENST00000364837 108 ntBASIC0.06□□□□□ -2.4
VPS54Q9P1Q0 RNU6-588P-201ENST00000410281 105 ntBASIC0.06□□□□□ -2.4
VPS54Q9P1Q0 RNU6-1045P-201ENST00000516321 107 ntBASIC0.06□□□□□ -2.4
VPS54Q9P1Q0 MIR8087-201ENST00000612745 78 ntBASIC0.06□□□□□ -2.4
VPS54Q9P1Q0 MIR3658-201ENST00000636291 56 ntBASIC0.06□□□□□ -2.4
VPS54Q9P1Q0 MIR411-201ENST00000362239 96 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.119-201ENST00000363301 96 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 RNA5SP214-201ENST00000363378 118 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 RNY1P2-201ENST00000364820 117 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 RNU6-702P-201ENST00000364982 107 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.476-201ENST00000384347 108 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.497-201ENST00000384447 98 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 MIR643-201ENST00000385267 97 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 MIRLET7F2-201ENST00000385277 83 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 RNU1-29P-201ENST00000606574 126 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 MIR499B-201ENST00000636498 73 ntBASIC0.05□□□□□ -2.4
VPS54Q9P1Q0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.04□□□□□ -2.4
VPS54Q9P1Q0 SNORA9.1-201ENST00000362412 131 ntBASIC0.04□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.83-201ENST00000363005 113 ntBASIC0.04□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.200-201ENST00000364018 102 ntBASIC0.04□□□□□ -2.4
VPS54Q9P1Q0 RNU6-127P-201ENST00000390897 107 ntBASIC0.04□□□□□ -2.4
VPS54Q9P1Q0 MIR3149-201ENST00000584629 83 ntBASIC0.04□□□□□ -2.4
VPS54Q9P1Q0 AC104408.1-201ENST00000605241 170 ntBASIC0.04□□□□□ -2.4
VPS54Q9P1Q0 SNORD114-5-201ENST00000362928 70 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 SNORD115-24-201ENST00000363528 82 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.193-201ENST00000363979 102 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 229.9 ms