Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.330-201ENST00000365230 109 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 RNU6-1201P-201ENST00000384227 107 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 Y_RNA.467-201ENST00000384297 102 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 Y_RNA.507-201ENST00000384500 99 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 MIR563-201ENST00000385080 79 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 SNORA75.2-201ENST00000391138 150 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 RNU6-644P-201ENST00000391155 98 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 SNORA75.3-201ENST00000391231 150 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 MIR1912-201ENST00000410389 80 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 RNU6-613P-201ENST00000410412 108 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 MIR4777-201ENST00000583710 86 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 BX248123.2-201ENST00000606318 124 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 MALAT1.1-201ENST00000618249 95 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
HOXA4Q00056 RNU6-170P-201ENST00000362832 104 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 Y_RNA.78-201ENST00000362970 110 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 RNU6-409P-201ENST00000384114 104 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 MIR206-201ENST00000384872 86 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 MT-TN-201ENST00000387400 73 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 RNU4-62P-201ENST00000410125 130 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 RNU6-733P-201ENST00000410759 104 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 AC108667.1-201ENST00000428618 249 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 RNU7-62P-201ENST00000458856 62 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 SNORA40.13-201ENST00000516379 120 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 RNU6-1006P-201ENST00000516998 103 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 DEFB131E-201ENST00000532329 154 ntBASIC1.29□□□□□ -2.2
HOXA4Q00056 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.29□□□□□ -2.2
HOXA4Q00056 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
HOXA4Q00056 MIR30D-201ENST00000362283 70 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 RNU6-580P-201ENST00000365159 107 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 Y_RNA.544-201ENST00000384650 113 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 MIR34C-201ENST00000384831 77 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 MIR1304-201ENST00000408243 91 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 RNU6-1165P-201ENST00000410119 107 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 RNU6-592P-201ENST00000411333 103 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 BTF3P4-201ENST00000418852 495 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 RNU7-2P-201ENST00000516096 62 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 RNU7-137P-201ENST00000516788 62 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 MIR4694-201ENST00000578534 80 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 MIR376B-201ENST00000614515 100 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 Y_RNA.818-201ENST00000618813 71 ntBASIC1.28□□□□□ -2.2
HOXA4Q00056 RNU6-60P-201ENST00000364792 103 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 SNORA2B-201ENST00000384583 137 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 MIR320A-201ENST00000385302 82 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 RNU6-910P-201ENST00000390844 107 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 RNY4P29-201ENST00000410801 97 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 AL354695.1-201ENST00000427935 228 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 SCARNA23-201ENST00000516060 130 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 RNU6-844P-201ENST00000517175 102 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 MIR4255-201ENST00000579351 72 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 AL442128.1-201ENST00000615151 90 ntBASIC1.27□□□□□ -2.21
HOXA4Q00056 MIR377-201ENST00000362145 69 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 RNA5SP432-201ENST00000362480 116 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 RNY1P10-201ENST00000363268 113 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 SNORD114-10-201ENST00000363409 72 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 RNU6-1321P-201ENST00000390905 107 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 Y_RNA.593-201ENST00000410292 98 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 AC096949.1-201ENST00000412047 152 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 snoU13.21-201ENST00000459368 105 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 AC036111.3-201ENST00000526389 112 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 U7.3-201ENST00000616123 62 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 AL512310.12-203ENST00000640543 90 ntBASIC1.26□□□□□ -2.21
HOXA4Q00056 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HOXA4Q00056 Y_RNA.190-201ENST00000363964 101 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 RNU6-949P-201ENST00000384040 107 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 Y_RNA.448-201ENST00000384185 108 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 U8.15-201ENST00000390947 134 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 AC004941.2-201ENST00000427009 228 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 AC023790.1-201ENST00000482174 347 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 RNU6-158P-201ENST00000517104 100 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.25□□□□□ -2.21
HOXA4Q00056 AC023827.1-201ENST00000569247 97 ntBASIC1.25□□□□□ -2.21
HOXA4Q00056 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.25□□□□□ -2.21
HOXA4Q00056 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
HOXA4Q00056 RNU6-1313P-201ENST00000362622 102 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 Y_RNA.93-201ENST00000363066 109 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 Y_RNA.168-201ENST00000363740 102 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 RNU6-1113P-201ENST00000384348 107 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 Y_RNA.601-201ENST00000410500 113 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 RNU7-21P-201ENST00000459430 62 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 RNA5SP61-201ENST00000516453 100 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 SNORD53B-201ENST00000577887 78 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 SNORA4-201ENST00000584302 138 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.24□□□□□ -2.21
HOXA4Q00056 MIR494-201ENST00000349529 81 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 RNA5SP327-201ENST00000362494 101 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 RNU6-1163P-201ENST00000364516 107 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 SNORD113.3-201ENST00000364630 78 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 SNORA80D-201ENST00000384488 135 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 SNORA67.6-201ENST00000391093 99 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 AL591704.2-201ENST00000421658 181 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 AC109327.2-201ENST00000448339 378 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 AC108729.3-201ENST00000513484 108 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 SNORD79.1-201ENST00000516069 84 ntBASIC1.23□□□□□ -2.21
HOXA4Q00056 RNU6-267P-201ENST00000516714 103 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms