Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
RNF39Q9H2S5 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
RNF39Q9H2S5 MIR103A2-201ENST00000362154 78 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 SNORD28-201ENST00000384706 75 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 MT-TY-201ENST00000387409 66 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 RNA5SP465-201ENST00000391195 109 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 AC004965.1-201ENST00000413033 213 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 snoU13.25-201ENST00000458945 104 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 RNU7-104P-201ENST00000459398 79 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 AP003716.2-201ENST00000528260 108 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 MIR3200-201ENST00000580767 85 ntBASIC3.86□□□□□ -1.79
RNF39Q9H2S5 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
RNF39Q9H2S5 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
RNF39Q9H2S5 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
RNF39Q9H2S5 MIR448-201ENST00000362131 111 ntBASIC3.85□□□□□ -1.79
RNF39Q9H2S5 SNORD17-201ENST00000390930 237 ntBASIC3.85□□□□□ -1.79
RNF39Q9H2S5 RNU7-161P-201ENST00000517289 62 ntBASIC3.85□□□□□ -1.79
RNF39Q9H2S5 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.85□□□□□ -1.79
RNF39Q9H2S5 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
RNF39Q9H2S5 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
RNF39Q9H2S5 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
RNF39Q9H2S5 AL035425.3-201ENST00000564206 4996 ntBASIC3.84□□□□□ -1.79
RNF39Q9H2S5 Y_RNA.69-201ENST00000362885 109 ntBASIC3.84□□□□□ -1.79
RNF39Q9H2S5 RNA5SP259-201ENST00000365541 109 ntBASIC3.84□□□□□ -1.79
RNF39Q9H2S5 AL451105.1-201ENST00000450005 189 ntBASIC3.84□□□□□ -1.79
RNF39Q9H2S5 SNORD59.2-201ENST00000516873 68 ntBASIC3.84□□□□□ -1.79
RNF39Q9H2S5 MIR3126-201ENST00000577443 74 ntBASIC3.84□□□□□ -1.79
RNF39Q9H2S5 MIR4635-201ENST00000583759 79 ntBASIC3.84□□□□□ -1.79
RNF39Q9H2S5 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
RNF39Q9H2S5 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.83□□□□□ -1.8
RNF39Q9H2S5 MIR329-2-201ENST00000385029 84 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 RNU6-360P-201ENST00000390944 104 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 AC004552.1-201ENST00000419089 348 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 HMGN2P38-201ENST00000423806 265 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 RPS26P3-201ENST00000470205 348 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 AC090543.2-201ENST00000483963 348 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 AC004057.1-201ENST00000485827 348 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 AL133373.1-201ENST00000497098 94 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 RNU6-518P-201ENST00000516056 96 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.83□□□□□ -1.8
RNF39Q9H2S5 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.83□□□□□ -1.8
RNF39Q9H2S5 MIR4460-201ENST00000577862 86 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
RNF39Q9H2S5 OTUD4P1-201ENST00000237841 3067 ntBASIC3.83□□□□□ -1.8
RNF39Q9H2S5 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.82□□□□□ -1.8
RNF39Q9H2S5 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.82□□□□□ -1.8
RNF39Q9H2S5 AC080100.1-201ENST00000624239 5356 ntBASIC3.82□□□□□ -1.8
RNF39Q9H2S5 MIR579-201ENST00000385221 98 ntBASIC3.82□□□□□ -1.8
RNF39Q9H2S5 RNA5SP39-201ENST00000411245 120 ntBASIC3.82□□□□□ -1.8
RNF39Q9H2S5 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
RNF39Q9H2S5 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
RNF39Q9H2S5 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF39Q9H2S5 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
RNF39Q9H2S5 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF39Q9H2S5 RNA5SP42-201ENST00000364278 115 ntBASIC3.81□□□□□ -1.8
RNF39Q9H2S5 RNU6-934P-201ENST00000365154 107 ntBASIC3.81□□□□□ -1.8
RNF39Q9H2S5 RNU4ATAC4P-201ENST00000516307 126 ntBASIC3.81□□□□□ -1.8
RNF39Q9H2S5 IGKV2-26-201ENST00000518305 343 ntBASIC3.81□□□□□ -1.8
RNF39Q9H2S5 CYP3A54P-201ENST00000566950 75 ntBASIC3.81□□□□□ -1.8
RNF39Q9H2S5 MIR7851-201ENST00000610611 160 ntBASIC3.81□□□□□ -1.8
RNF39Q9H2S5 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF39Q9H2S5 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.8□□□□□ -1.8
RNF39Q9H2S5 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
RNF39Q9H2S5 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
RNF39Q9H2S5 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.8□□□□□ -1.8
RNF39Q9H2S5 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
RNF39Q9H2S5 U8.2-201ENST00000363156 134 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
RNF39Q9H2S5 RNA5SP501-201ENST00000410990 112 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 RNU6-947P-201ENST00000516264 106 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 RNU6-579P-201ENST00000516879 102 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 MIR4771-2-201ENST00000577758 74 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 MIR4474-201ENST00000579189 78 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 MIR4771-1-201ENST00000582617 74 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 AP003355.3-201ENST00000623465 114 ntBASIC3.8□□□□□ -1.8
RNF39Q9H2S5 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.79□□□□□ -1.8
RNF39Q9H2S5 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
RNF39Q9H2S5 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
RNF39Q9H2S5 RNA5SP264-201ENST00000363115 107 ntBASIC3.79□□□□□ -1.8
RNF39Q9H2S5 MIR634-201ENST00000385208 97 ntBASIC3.79□□□□□ -1.8
RNF39Q9H2S5 MIR758-201ENST00000390227 88 ntBASIC3.79□□□□□ -1.8
RNF39Q9H2S5 MIR8058-201ENST00000615737 89 ntBASIC3.79□□□□□ -1.8
RNF39Q9H2S5 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
RNF39Q9H2S5 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
RNF39Q9H2S5 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
RNF39Q9H2S5 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
RNF39Q9H2S5 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
RNF39Q9H2S5 SNORA63.6-201ENST00000364921 119 ntBASIC3.78□□□□□ -1.8
RNF39Q9H2S5 MIR194-1-201ENST00000384892 85 ntBASIC3.78□□□□□ -1.8
RNF39Q9H2S5 AC104332.2-201ENST00000429959 156 ntBASIC3.78□□□□□ -1.8
RNF39Q9H2S5 RNU2-27P-201ENST00000516185 142 ntBASIC3.78□□□□□ -1.8
RNF39Q9H2S5 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.78□□□□□ -1.8
RNF39Q9H2S5 AC067863.3-201ENST00000624172 122 ntBASIC3.78□□□□□ -1.8
RNF39Q9H2S5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
RNF39Q9H2S5 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
RNF39Q9H2S5 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
RNF39Q9H2S5 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
RNF39Q9H2S5 RNU1-18P-201ENST00000363062 164 ntBASIC3.77□□□□□ -1.81
RNF39Q9H2S5 SNORD111B-201ENST00000408587 80 ntBASIC3.77□□□□□ -1.81
RNF39Q9H2S5 RNA5SP120-201ENST00000410900 112 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms