Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 AC025033.1-201ENST00000463883 194 ntBASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 MIR4285-201ENST00000581001 85 ntBASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 ZNF355P-201ENST00000427301 3216 ntBASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.190-201ENST00000363964 101 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 SNORD45B-201ENST00000364617 72 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 SNORA32-201ENST00000384072 121 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNU6-675P-201ENST00000384236 104 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 SNORA18-201ENST00000384416 132 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.537-201ENST00000384626 109 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNU6-1307P-201ENST00000391012 103 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 SNORD77B-201ENST00000391112 67 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNA5SP261-201ENST00000410536 106 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNU6-322P-201ENST00000516010 103 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNA5SP182-201ENST00000516064 82 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNU6-917P-201ENST00000516294 104 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNA5SP395-201ENST00000516567 118 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 MIR5089-201ENST00000580047 84 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 MIR6845-201ENST00000613182 61 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 AL353997.5-201ENST00000618886 171 ntBASIC1.84□□□□□ -2.11
CLIP3Q96DZ5 RNA5SP99-201ENST00000364020 114 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 Y_RNA.247-201ENST00000364500 92 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 SNORD115-35-201ENST00000365122 82 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 RNU6-342P-201ENST00000384521 104 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 RNU6-482P-201ENST00000391068 107 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 SNORA26.9-201ENST00000391322 122 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 MRPL35P3-201ENST00000421557 364 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 UBL5P1-201ENST00000507979 193 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 RNU6-1006P-201ENST00000516998 103 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 SNORA74.3-201ENST00000517108 154 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 MIR8065-201ENST00000620577 100 ntBASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.83□□□□□ -2.12
CLIP3Q96DZ5 RNU6-228P-201ENST00000362700 106 ntBASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 Y_RNA.73-201ENST00000362910 113 ntBASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 AC022137.1-201ENST00000483735 151 ntBASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 RNU7-35P-201ENST00000517174 62 ntBASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 RNU6-902P-201ENST00000517212 91 ntBASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CLIP3Q96DZ5 RNU6-787P-201ENST00000384032 107 ntBASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 AC090844.1-201ENST00000422019 156 ntBASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 snoU13.16-201ENST00000459350 104 ntBASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 AC108729.3-201ENST00000513484 108 ntBASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 Y_RNA.659-201ENST00000515994 113 ntBASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 FAM106DP-201ENST00000586416 501 ntBASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.81□□□□□ -2.12
CLIP3Q96DZ5 SNORA1.1-201ENST00000364671 133 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 RNU6-219P-201ENST00000364728 107 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 RNU6-887P-201ENST00000410660 100 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 RNU6-402P-201ENST00000410678 103 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 Y_RNA.705-201ENST00000516862 110 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 RNU6-250P-201ENST00000516958 103 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 MIR376B-201ENST00000614515 100 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 Z97988.1-201ENST00000637697 135 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 AL512310.12-203ENST00000640543 90 ntBASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CLIP3Q96DZ5 RNY1P1-201ENST00000364372 112 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 RNU6-497P-201ENST00000365316 104 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 MIR206-201ENST00000384872 86 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 RPS27P16-201ENST00000425758 201 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 AC003989.2-201ENST00000440224 169 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 AC109327.2-201ENST00000448339 378 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 RPL30P7-201ENST00000479312 323 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 RNU7-2P-201ENST00000516096 62 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 RNU6-267P-201ENST00000516714 103 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 RNU6-922P-201ENST00000516753 99 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 MIR4439-201ENST00000583746 80 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.79□□□□□ -2.12
CLIP3Q96DZ5 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 Y_RNA.140-201ENST00000363474 103 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 RNU6-1163P-201ENST00000364516 107 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 RNU6-979P-201ENST00000383896 107 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 RNU6-1124P-201ENST00000384169 107 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 RNU6-972P-201ENST00000391208 107 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 RNA5SP225-201ENST00000410874 135 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 RNU6-602P-201ENST00000411155 105 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 SEPT14P17-201ENST00000617978 177 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 AC008133.2-201ENST00000624540 351 ntBASIC1.78□□□□□ -2.12
CLIP3Q96DZ5 Y_RNA.96-201ENST00000363092 109 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 RNU6-1276P-201ENST00000365372 104 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 SNORD58A-201ENST00000383875 65 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 U8.15-201ENST00000390947 134 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 AC245047.7-201ENST00000440265 293 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 RPL39P39-201ENST00000455840 151 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 MIR4764-201ENST00000580680 88 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 GHRLOS.1-201ENST00000610995 70 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 IGLL4P-201ENST00000614590 133 ntBASIC1.77□□□□□ -2.13
CLIP3Q96DZ5 SNORD116-22-201ENST00000384430 92 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 RNU6-813P-201ENST00000384691 107 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 MIR34C-201ENST00000384831 77 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 SNORD41-201ENST00000386967 70 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 MIR1255A-201ENST00000408338 113 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 184.1 ms