Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 WWP1P1-201ENST00000466609 2769 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
NPAS3Q8IXF0 RPS29P6-201ENST00000438196 145 ntBASIC2.75□□□□□ -1.97
NPAS3Q8IXF0 DLEU2_3.2-201ENST00000612883 73 ntBASIC2.75□□□□□ -1.97
NPAS3Q8IXF0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 SNORA26.7-201ENST00000391288 122 ntBASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 AL023284.1-201ENST00000403956 276 ntBASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 RPS29P12-201ENST00000460178 152 ntBASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 SUB1P4-201ENST00000566062 339 ntBASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 MIR5089-201ENST00000580047 84 ntBASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 AC092634.7-201ENST00000621022 103 ntBASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
NPAS3Q8IXF0 AC092435.3-201ENST00000565538 3654 ntBASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 RNY4P3-201ENST00000365254 95 ntBASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 RNU6-1184P-201ENST00000384588 108 ntBASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 RNU6-950P-201ENST00000384651 107 ntBASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 SNORD88.1-201ENST00000408684 91 ntBASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 MIR3605-201ENST00000583214 100 ntBASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 AL096861.1-201ENST00000610899 123 ntBASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
NPAS3Q8IXF0 MAPK10-322ENST00000641485 4530 ntBASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 MIR520C-201ENST00000385005 87 ntBASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 SNORA3.2-201ENST00000408221 125 ntBASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 SNORD63B-201ENST00000411005 70 ntBASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 RNU6-1052P-201ENST00000411398 104 ntBASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 RNU6-719P-201ENST00000516671 104 ntBASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
NPAS3Q8IXF0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.97
NPAS3Q8IXF0 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 Y_RNA.239-201ENST00000364444 113 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 RNU6-220P-201ENST00000390919 107 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 RN7SL499P-201ENST00000481141 276 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 RNA5SP320-201ENST00000516263 124 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 SCARNA16.3-201ENST00000516595 184 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 RNU2-19P-201ENST00000517288 84 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 MIR4635-201ENST00000583759 79 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 AC021506.2-201ENST00000612354 169 ntBASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.71□□□□□ -1.98
NPAS3Q8IXF0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 RNA5SP289-201ENST00000362332 137 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 RNU6-824P-201ENST00000363724 104 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 MIR660-201ENST00000385235 97 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 RNU6-808P-201ENST00000391233 108 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 Y_RNA.606-201ENST00000410579 103 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 AL606490.4-201ENST00000423117 127 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 RNU7-43P-201ENST00000516554 64 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 MIR466-201ENST00000580653 84 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 AC005786.1-201ENST00000588553 154 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 MIR4251-201ENST00000635819 61 ntBASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.7□□□□□ -1.98
NPAS3Q8IXF0 ZNF658B-202ENST00000615961 3375 ntBASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 MIR588-201ENST00000384900 83 ntBASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 AC104332.2-201ENST00000429959 156 ntBASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 RNU6-982P-201ENST00000516216 102 ntBASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 SNORA9.3-201ENST00000516383 129 ntBASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
NPAS3Q8IXF0 U8.2-201ENST00000363156 134 ntBASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 SNORA68.1-201ENST00000364537 132 ntBASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 MIR27B-201ENST00000385129 97 ntBASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 AC244023.1-201ENST00000426884 112 ntBASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 RNU6-531P-201ENST00000516694 104 ntBASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 MIR3935-201ENST00000583472 104 ntBASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 AC242498.1-201ENST00000604134 111 ntBASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NPAS3Q8IXF0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 RNU6-446P-201ENST00000362827 106 ntBASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 RNA5SP192-201ENST00000364404 120 ntBASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 RNA5SP117-201ENST00000365294 118 ntBASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 BX510359.4-201ENST00000423750 193 ntBASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 snoU13.2-201ENST00000459201 104 ntBASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 AC022202.1-201ENST00000613515 211 ntBASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
NPAS3Q8IXF0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 RNU4-53P-201ENST00000410828 140 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 AC003685.2-201ENST00000422795 395 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 RPS27P16-201ENST00000425758 201 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 AC104389.3-201ENST00000445629 235 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 RNU7-195P-201ENST00000458793 62 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 AC097510.1-201ENST00000510945 133 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 RNU6-56P-201ENST00000516986 93 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 SNORA4-201ENST00000584302 138 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 U6.81-201ENST00000612550 106 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 TRDV1-202ENST00000621643 102 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms