Protein–RNA interactions for Protein: P16070

CD44, CD44 antigen, humanhuman

Known RBP Predictions only

Length 742 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD44P16070 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CD44P16070 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CD44P16070 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CD44P16070 HMGN2P3-201ENST00000433603 273 ntBASIC3.44□□□□□ -1.86
CD44P16070 HMGN2P5-201ENST00000436882 273 ntBASIC3.44□□□□□ -1.86
CD44P16070 UQCRHP3-201ENST00000451503 251 ntBASIC3.44□□□□□ -1.86
CD44P16070 IGLVVI-22-1-201ENST00000521183 211 ntBASIC3.44□□□□□ -1.86
CD44P16070 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.44□□□□□ -1.86
CD44P16070 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CD44P16070 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CD44P16070 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
CD44P16070 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CD44P16070 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CD44P16070 SNORD115-44-201ENST00000365391 82 ntBASIC3.43□□□□□ -1.86
CD44P16070 SNORD67-201ENST00000390833 111 ntBASIC3.43□□□□□ -1.86
CD44P16070 AP004217.1-201ENST00000480579 346 ntBASIC3.43□□□□□ -1.86
CD44P16070 RN7SL274P-201ENST00000492268 272 ntBASIC3.43□□□□□ -1.86
CD44P16070 DEFB122-202ENST00000569013 197 ntBASIC3.43□□□□□ -1.86
CD44P16070 MIR5047-201ENST00000579212 100 ntBASIC3.43□□□□□ -1.86
CD44P16070 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.43□□□□□ -1.86
CD44P16070 5S_rRNA.15-201ENST00000611169 127 ntBASIC3.43□□□□□ -1.86
CD44P16070 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.43□□□□□ -1.86
CD44P16070 SNORA2.1-201ENST00000363089 137 ntBASIC3.42□□□□□ -1.86
CD44P16070 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CD44P16070 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.42□□□□□ -1.86
CD44P16070 AC104332.2-201ENST00000429959 156 ntBASIC3.42□□□□□ -1.86
CD44P16070 RNU6-765P-201ENST00000516916 99 ntBASIC3.42□□□□□ -1.86
CD44P16070 MIR6739-201ENST00000622461 75 ntBASIC3.42□□□□□ -1.86
CD44P16070 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CD44P16070 SNORA62.3-201ENST00000365110 153 ntBASIC3.41□□□□□ -1.86
CD44P16070 SNORA7.4-201ENST00000384249 137 ntBASIC3.41□□□□□ -1.86
CD44P16070 MIR200C-201ENST00000384980 68 ntBASIC3.41□□□□□ -1.86
CD44P16070 SNORA84-201ENST00000459229 133 ntBASIC3.41□□□□□ -1.86
CD44P16070 AC025033.1-201ENST00000463883 194 ntBASIC3.41□□□□□ -1.86
CD44P16070 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.41□□□□□ -1.86
CD44P16070 SNRPGP19-201ENST00000603826 189 ntBASIC3.41□□□□□ -1.86
CD44P16070 MIR6516-201ENST00000630554 81 ntBASIC3.41□□□□□ -1.86
CD44P16070 AL365361.1-201ENST00000566942 3481 ntBASIC3.4□□□□□ -1.86
CD44P16070 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.4□□□□□ -1.86
CD44P16070 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.4□□□□□ -1.87
CD44P16070 SNORD113-2-201ENST00000391082 72 ntBASIC3.4□□□□□ -1.87
CD44P16070 AC005326.1-201ENST00000429197 123 ntBASIC3.4□□□□□ -1.87
CD44P16070 RN7SL863P-201ENST00000462370 296 ntBASIC3.4□□□□□ -1.87
CD44P16070 MIR7975-201ENST00000619350 68 ntBASIC3.4□□□□□ -1.87
CD44P16070 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CD44P16070 SNORD41-201ENST00000386967 70 ntBASIC3.39□□□□□ -1.87
CD44P16070 RNA5SP465-201ENST00000391195 109 ntBASIC3.39□□□□□ -1.87
CD44P16070 MIR7112-201ENST00000616126 65 ntBASIC3.39□□□□□ -1.87
CD44P16070 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CD44P16070 AL035425.3-201ENST00000564206 4996 ntBASIC3.39□□□□□ -1.87
CD44P16070 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CD44P16070 MAPK10-266ENST00000641066 6555 ntBASIC3.38□□□□□ -1.87
CD44P16070 SNORD21-201ENST00000383953 95 ntBASIC3.38□□□□□ -1.87
CD44P16070 SNORA54-201ENST00000384281 123 ntBASIC3.38□□□□□ -1.87
CD44P16070 MIR216B-201ENST00000390186 82 ntBASIC3.38□□□□□ -1.87
CD44P16070 RNU6-724P-201ENST00000390958 105 ntBASIC3.38□□□□□ -1.87
CD44P16070 RNU6-1250P-201ENST00000391218 107 ntBASIC3.38□□□□□ -1.87
CD44P16070 RNA5SP344-201ENST00000411081 104 ntBASIC3.38□□□□□ -1.87
CD44P16070 AC105272.1-201ENST00000438604 198 ntBASIC3.38□□□□□ -1.87
CD44P16070 RNU7-185P-201ENST00000459215 60 ntBASIC3.38□□□□□ -1.87
CD44P16070 SNORA40.17-201ENST00000517256 115 ntBASIC3.38□□□□□ -1.87
CD44P16070 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.38□□□□□ -1.87
CD44P16070 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
CD44P16070 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.37□□□□□ -1.87
CD44P16070 RNU6-580P-201ENST00000365159 107 ntBASIC3.37□□□□□ -1.87
CD44P16070 Y_RNA.333-201ENST00000365274 102 ntBASIC3.37□□□□□ -1.87
CD44P16070 RNA5SP380-201ENST00000517190 98 ntBASIC3.37□□□□□ -1.87
CD44P16070 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.36□□□□□ -1.87
CD44P16070 SNORA71.3-201ENST00000362582 128 ntBASIC3.36□□□□□ -1.87
CD44P16070 RNU6-203P-201ENST00000384038 104 ntBASIC3.36□□□□□ -1.87
CD44P16070 SNORD15B-201ENST00000384714 146 ntBASIC3.36□□□□□ -1.87
CD44P16070 MIR449B-201ENST00000384995 97 ntBASIC3.36□□□□□ -1.87
CD44P16070 MIR3126-201ENST00000577443 74 ntBASIC3.36□□□□□ -1.87
CD44P16070 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.36□□□□□ -1.87
CD44P16070 AC108206.1-201ENST00000570186 4159 ntBASIC3.36□□□□□ -1.87
CD44P16070 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CD44P16070 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CD44P16070 RNU6-54P-201ENST00000365563 107 ntBASIC3.35□□□□□ -1.87
CD44P16070 MIR548C-201ENST00000384815 97 ntBASIC3.35□□□□□ -1.87
CD44P16070 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CD44P16070 RNA5SP501-201ENST00000410990 112 ntBASIC3.35□□□□□ -1.87
CD44P16070 AL157398.1-201ENST00000452981 186 ntBASIC3.35□□□□□ -1.87
CD44P16070 snoU13.22-201ENST00000459428 104 ntBASIC3.35□□□□□ -1.87
CD44P16070 RN7SL633P-201ENST00000488974 297 ntBASIC3.35□□□□□ -1.87
CD44P16070 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.35□□□□□ -1.87
CD44P16070 MIR5680-201ENST00000577577 84 ntBASIC3.35□□□□□ -1.87
CD44P16070 ZNF355P-201ENST00000427301 3216 ntBASIC3.35□□□□□ -1.87
CD44P16070 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
CD44P16070 RNU6-838P-201ENST00000363399 108 ntBASIC3.34□□□□□ -1.87
CD44P16070 RNU6-698P-201ENST00000363523 107 ntBASIC3.34□□□□□ -1.87
CD44P16070 RNA5SP245-201ENST00000364239 121 ntBASIC3.34□□□□□ -1.87
CD44P16070 RNU6-34P-201ENST00000364874 107 ntBASIC3.34□□□□□ -1.87
CD44P16070 Y_RNA.330-201ENST00000365230 109 ntBASIC3.34□□□□□ -1.87
CD44P16070 SNORD6-201ENST00000365444 73 ntBASIC3.34□□□□□ -1.87
CD44P16070 MIR1257-201ENST00000408490 117 ntBASIC3.34□□□□□ -1.87
CD44P16070 RNU6-994P-201ENST00000410507 111 ntBASIC3.34□□□□□ -1.87
CD44P16070 RPS29P6-201ENST00000438196 145 ntBASIC3.34□□□□□ -1.87
CD44P16070 RN7SL330P-201ENST00000469709 307 ntBASIC3.34□□□□□ -1.87
CD44P16070 MIR8058-201ENST00000615737 89 ntBASIC3.34□□□□□ -1.87
CD44P16070 MIR548O2-201ENST00000616090 70 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms