Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL512310.12-203ENST00000640543 90 ntBASIC1.73□□□□□ -2.13
COL3A1P02461 AL442644.1-201ENST00000454390 3105 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 RNU6-242P-201ENST00000384359 107 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 MIR452-201ENST00000385020 85 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 RNU11-3P-201ENST00000391111 133 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 RNU6-972P-201ENST00000391208 107 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 RNU7-45P-201ENST00000459460 63 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 RNU2-13P-201ENST00000515909 113 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 Y_RNA.705-201ENST00000516862 110 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 RNU6-1258P-201ENST00000516911 111 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 MIR3202-2-201ENST00000635980 79 ntBASIC1.72□□□□□ -2.13
COL3A1P02461 SNORA22.1-201ENST00000362701 134 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 Y_RNA.377-201ENST00000365644 108 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 Y_RNA.430-201ENST00000384081 110 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 RNU6-1124P-201ENST00000384169 107 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 RNU6-616P-201ENST00000384353 107 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 RNU6-342P-201ENST00000384521 104 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 RNU6-679P-201ENST00000391003 106 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 RPL39P39-201ENST00000455840 151 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 AC022137.1-201ENST00000483735 151 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 Y_RNA.659-201ENST00000515994 113 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 RNU6-162P-201ENST00000516228 103 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 RNU6-521P-201ENST00000516663 105 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.71□□□□□ -2.14
COL3A1P02461 Y_RNA.95-201ENST00000363079 95 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 Y_RNA.190-201ENST00000363964 101 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 RNU6-203P-201ENST00000384038 104 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 MIR516B2-201ENST00000385190 85 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 RNU6-887P-201ENST00000410660 100 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 RNU2-7P-201ENST00000410794 178 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 MIR4777-201ENST00000583710 86 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 MIR4439-201ENST00000583746 80 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 MIR6767-201ENST00000637302 66 ntBASIC1.7□□□□□ -2.14
COL3A1P02461 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.7□□□□□ -2.14
COL3A1P02461 Y_RNA.470-201ENST00000384307 117 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 RNU6-1031P-201ENST00000384773 107 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 MIR758-201ENST00000390227 88 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 RNU7-73P-201ENST00000458743 63 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 MIR548AE2-201ENST00000583456 67 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 MIR6717-201ENST00000622747 73 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 SNORD3E-202ENST00000627253 216 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 RNU6-1276P-201ENST00000365372 104 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 SNORA24-201ENST00000384096 131 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 RNU6-1201P-201ENST00000384227 107 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 MIR1255A-201ENST00000408338 113 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 HSPE1P9-201ENST00000440046 311 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 MIR548AR-201ENST00000582191 57 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 MIR4791-201ENST00000607666 84 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 AC022202.1-201ENST00000613515 211 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 AC243994.1-201ENST00000618627 109 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 AC025521.1-201ENST00000621624 286 ntBASIC1.69□□□□□ -2.14
COL3A1P02461 AL359851.1-201ENST00000569460 4997 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 RNU6-228P-201ENST00000362700 106 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 SNORA38-201ENST00000363946 132 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 SNORD115-35-201ENST00000365122 82 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 Y_RNA.537-201ENST00000384626 109 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 MIR520A-201ENST00000384862 85 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 SNORA26.6-201ENST00000391256 115 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 RNU7-34P-201ENST00000459394 64 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 MIR548Z-201ENST00000584743 97 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 MIR6078-201ENST00000611069 100 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 MIR6841-201ENST00000637129 72 ntBASIC1.68□□□□□ -2.14
COL3A1P02461 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
COL3A1P02461 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL3A1P02461 RNU6-1313P-201ENST00000362622 102 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 SNORA1.1-201ENST00000364671 133 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 RNU6-497P-201ENST00000365316 104 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 RNU6-675P-201ENST00000384236 104 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 AL353813.1-201ENST00000440700 253 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 AC093850.1-201ENST00000454121 251 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 AC023790.1-201ENST00000482174 347 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 RNA5SP137-201ENST00000516833 135 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.67□□□□□ -2.14
COL3A1P02461 AL078603.1-201ENST00000603824 313 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.67□□□□□ -2.14
COL3A1P02461 MIR6515-201ENST00000619843 57 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 AC091304.10-201ENST00000641554 121 ntBASIC1.67□□□□□ -2.14
COL3A1P02461 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
COL3A1P02461 SNORD58A-201ENST00000383875 65 ntBASIC1.66□□□□□ -2.14
COL3A1P02461 Y_RNA.467-201ENST00000384297 102 ntBASIC1.66□□□□□ -2.14
COL3A1P02461 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.66□□□□□ -2.14
COL3A1P02461 SNORD123-201ENST00000459473 70 ntBASIC1.66□□□□□ -2.14
COL3A1P02461 AL020996.3-201ENST00000606617 222 ntBASIC1.66□□□□□ -2.14
COL3A1P02461 MIR7974-201ENST00000615835 79 ntBASIC1.66□□□□□ -2.14
COL3A1P02461 AL513423.1-201ENST00000621695 132 ntBASIC1.66□□□□□ -2.14
COL3A1P02461 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
COL3A1P02461 SNORD116-10-201ENST00000363791 102 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 Y_RNA.374-201ENST00000365606 101 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 RNU6-813P-201ENST00000384691 107 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 RNA5SP465-201ENST00000391195 109 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 snoU13.16-201ENST00000459350 104 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 RNA5SP395-201ENST00000516567 118 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 MIR4709-201ENST00000577272 72 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 MIR8055-201ENST00000610739 97 ntBASIC1.65□□□□□ -2.15
COL3A1P02461 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.15
COL3A1P02461 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.64□□□□□ -2.15
COL3A1P02461 RNU6-979P-201ENST00000383896 107 ntBASIC1.64□□□□□ -2.15
COL3A1P02461 SNORA32-201ENST00000384072 121 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms