Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 AL109659.2-201ENST00000606809 1674 ntBASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 KATNBL1P6-202ENST00000562413 1466 ntBASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 AL158211.5-201ENST00000623583 2518 ntBASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC24.85■■□□□ 1.57
USHBP1Q8N6Y0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 ENSA-205ENST00000361532 792 ntTSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 CHCHD2P8-201ENST00000429873 447 ntBASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 AC010240.3-201ENST00000607688 395 ntBASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 AL732292.2-201ENST00000609649 430 ntBASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 KRT18P1-202ENST00000452408 1331 ntBASIC24.84■■□□□ 1.57
USHBP1Q8N6Y0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
USHBP1Q8N6Y0 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC24.83■■□□□ 1.56
USHBP1Q8N6Y0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.83■■□□□ 1.56
USHBP1Q8N6Y0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 TPSP2-201ENST00000561760 610 ntBASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC24.82■■□□□ 1.56
USHBP1Q8N6Y0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms