Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 RNA5SP137-201ENST00000516833 135 ntBASIC3.22□□□□□ -1.89
PCDHGA4Q9Y5G9 PRELID3BP2-201ENST00000605362 201 ntBASIC3.22□□□□□ -1.89
PCDHGA4Q9Y5G9 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
PCDHGA4Q9Y5G9 MIR30D-201ENST00000362283 70 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 RNA5SP48-201ENST00000363969 126 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU1-138P-201ENST00000384093 164 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 RN7SL75P-201ENST00000461926 281 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU6-881P-201ENST00000516813 102 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR4511-201ENST00000582784 87 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 U4.3-201ENST00000621047 82 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHGA4Q9Y5G9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA4Q9Y5G9 Y_RNA.239-201ENST00000364444 113 ntBASIC3.2□□□□□ -1.9
PCDHGA4Q9Y5G9 RN7SKP220-201ENST00000410611 288 ntBASIC3.2□□□□□ -1.9
PCDHGA4Q9Y5G9 Z96811.1-201ENST00000445880 108 ntBASIC3.2□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR2276-201ENST00000516886 89 ntBASIC3.2□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR6740-201ENST00000618268 113 ntBASIC3.2□□□□□ -1.9
PCDHGA4Q9Y5G9 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA4Q9Y5G9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR337-201ENST00000362281 93 ntBASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU6-1123P-201ENST00000362347 106 ntBASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU1-148P-201ENST00000384472 162 ntBASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 Y_RNA.606-201ENST00000410579 103 ntBASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR3124-201ENST00000582636 67 ntBASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
PCDHGA4Q9Y5G9 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 AC108206.1-201ENST00000570186 4159 ntBASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 ZNF209P-201ENST00000593450 2304 ntBASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU4-58P-201ENST00000363192 141 ntBASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU6-53P-201ENST00000365367 106 ntBASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 RPS27P16-201ENST00000425758 201 ntBASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU6-531P-201ENST00000516694 104 ntBASIC3.18□□□□□ -1.9
PCDHGA4Q9Y5G9 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 SNORA80A-201ENST00000363922 136 ntBASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU6-1165P-201ENST00000410119 107 ntBASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU4-47P-201ENST00000410876 114 ntBASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 AC105272.1-201ENST00000438604 198 ntBASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 SNORA31.15-201ENST00000516771 132 ntBASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 AC006023.1-201ENST00000603944 259 ntBASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR422A-201ENST00000362286 90 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 VTRNA1-1-201ENST00000363120 99 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 SNORD45.1-201ENST00000363181 77 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU6-669P-201ENST00000365575 107 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR518A2-201ENST00000384966 87 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR627-201ENST00000384979 97 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR653-201ENST00000385279 96 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 RNA5SP501-201ENST00000410990 112 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 UBBP3-201ENST00000445497 241 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 MIR4264-201ENST00000583520 66 ntBASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDHGA4Q9Y5G9 RNU6-1216P-201ENST00000362590 107 ntBASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 SNORD115-22-201ENST00000364456 82 ntBASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 RNU6-396P-201ENST00000365369 105 ntBASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 MT-TF-201ENST00000387314 71 ntBASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 AC110620.1-201ENST00000416042 228 ntBASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 uc_338.1-201ENST00000612113 180 ntBASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
PCDHGA4Q9Y5G9 RNA5SP229-201ENST00000410809 99 ntBASIC3.14□□□□□ -1.91
PCDHGA4Q9Y5G9 AC079150.2-201ENST00000443733 78 ntBASIC3.14□□□□□ -1.91
PCDHGA4Q9Y5G9 SNORD111.1-201ENST00000516421 86 ntBASIC3.14□□□□□ -1.91
PCDHGA4Q9Y5G9 MIR7106-201ENST00000612419 65 ntBASIC3.14□□□□□ -1.91
PCDHGA4Q9Y5G9 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHGA4Q9Y5G9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHGA4Q9Y5G9 MIR633-201ENST00000384821 98 ntBASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 AC097510.1-201ENST00000510945 133 ntBASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 RNU11-2P-201ENST00000516898 142 ntBASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 RNU2-19P-201ENST00000517288 84 ntBASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 DEFB122-202ENST00000569013 197 ntBASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 TRDV1-202ENST00000621643 102 ntBASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
PCDHGA4Q9Y5G9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 SNORD116-24-201ENST00000384549 92 ntBASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 SNORA25.16-201ENST00000516741 121 ntBASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 MIR3140-201ENST00000583685 90 ntBASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 AP000942.3-201ENST00000603702 160 ntBASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 AL627230.6-201ENST00000611129 280 ntBASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHGA4Q9Y5G9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
PCDHGA4Q9Y5G9 RNU6-664P-201ENST00000362381 107 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 239 ms