Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-267P-201ENST00000516714 103 ntBASIC2.59□□□□□ -1.99
CHMP3Q9Y3E7 MIR6840-201ENST00000611937 71 ntBASIC2.59□□□□□ -1.99
CHMP3Q9Y3E7 AC105081.1-201ENST00000617727 106 ntBASIC2.59□□□□□ -1.99
CHMP3Q9Y3E7 SEPT14P17-201ENST00000617978 177 ntBASIC2.59□□□□□ -1.99
CHMP3Q9Y3E7 RNY1P1-201ENST00000364372 112 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 RNU6-439P-201ENST00000384188 106 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 RNU6-1237P-201ENST00000384777 107 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 RNU6-402P-201ENST00000410678 103 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 RNU2-40P-201ENST00000410833 196 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 RNU6-1086P-201ENST00000410930 100 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 AC004965.1-201ENST00000413033 213 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 AC104435.1-201ENST00000483483 166 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 RNA5SP445-201ENST00000515889 115 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 CYP3A52P-201ENST00000563326 91 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 AC096720.1-201ENST00000604441 183 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.58□□□□□ -2
CHMP3Q9Y3E7 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CHMP3Q9Y3E7 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CHMP3Q9Y3E7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
CHMP3Q9Y3E7 Y_RNA.448-201ENST00000384185 108 ntBASIC2.57□□□□□ -2
CHMP3Q9Y3E7 AL356379.1-201ENST00000414105 126 ntBASIC2.57□□□□□ -2
CHMP3Q9Y3E7 RPL31P63-201ENST00000422565 375 ntBASIC2.57□□□□□ -2
CHMP3Q9Y3E7 RNU7-79P-201ENST00000516082 62 ntBASIC2.57□□□□□ -2
CHMP3Q9Y3E7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.57□□□□□ -2
CHMP3Q9Y3E7 RNU6-86P-201ENST00000606534 107 ntBASIC2.57□□□□□ -2
CHMP3Q9Y3E7 MIR4251-201ENST00000635819 61 ntBASIC2.57□□□□□ -2
CHMP3Q9Y3E7 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.56□□□□□ -2
CHMP3Q9Y3E7 RNU6-1163P-201ENST00000364516 107 ntBASIC2.56□□□□□ -2
CHMP3Q9Y3E7 RNU6-497P-201ENST00000365316 104 ntBASIC2.56□□□□□ -2
CHMP3Q9Y3E7 MIR17-201ENST00000385012 84 ntBASIC2.56□□□□□ -2
CHMP3Q9Y3E7 RNU2-19P-201ENST00000517288 84 ntBASIC2.56□□□□□ -2
CHMP3Q9Y3E7 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.56□□□□□ -2
CHMP3Q9Y3E7 IGLL4P-201ENST00000614590 133 ntBASIC2.56□□□□□ -2
CHMP3Q9Y3E7 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHMP3Q9Y3E7 Y_RNA.140-201ENST00000363474 103 ntBASIC2.55□□□□□ -2
CHMP3Q9Y3E7 SNORD78.1-201ENST00000390866 65 ntBASIC2.55□□□□□ -2
CHMP3Q9Y3E7 RNU6-1321P-201ENST00000390905 107 ntBASIC2.55□□□□□ -2
CHMP3Q9Y3E7 U8.15-201ENST00000390947 134 ntBASIC2.55□□□□□ -2
CHMP3Q9Y3E7 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.55□□□□□ -2
CHMP3Q9Y3E7 RPS27P21-201ENST00000486977 252 ntBASIC2.55□□□□□ -2
CHMP3Q9Y3E7 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CHMP3Q9Y3E7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CHMP3Q9Y3E7 Y_RNA.219-201ENST00000364232 113 ntBASIC2.54□□□□□ -2
CHMP3Q9Y3E7 RNA5SP259-201ENST00000365541 109 ntBASIC2.54□□□□□ -2
CHMP3Q9Y3E7 RNU6-813P-201ENST00000384691 107 ntBASIC2.54□□□□□ -2
CHMP3Q9Y3E7 RNU6-972P-201ENST00000391208 107 ntBASIC2.54□□□□□ -2
CHMP3Q9Y3E7 RNU7-137P-201ENST00000516788 62 ntBASIC2.54□□□□□ -2
CHMP3Q9Y3E7 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.54□□□□□ -2
CHMP3Q9Y3E7 AC103810.7-201ENST00000607821 91 ntBASIC2.54□□□□□ -2
CHMP3Q9Y3E7 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.54□□□□□ -2
CHMP3Q9Y3E7 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.54□□□□□ -2
CHMP3Q9Y3E7 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CHMP3Q9Y3E7 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.54□□□□□ -2
CHMP3Q9Y3E7 RNU6-228P-201ENST00000362700 106 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 RNU6-219P-201ENST00000364728 107 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 Y_RNA.354-201ENST00000365448 111 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 RNU6-675P-201ENST00000384236 104 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 MIR653-201ENST00000385279 96 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 AL161935.2-201ENST00000414627 60 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 RPS29P28-201ENST00000446439 141 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 AC009474.2-201ENST00000451383 136 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.53□□□□□ -2
CHMP3Q9Y3E7 SNRPGP19-201ENST00000603826 189 ntBASIC2.53□□□□□ -2
CHMP3Q9Y3E7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.53□□□□□ -2
CHMP3Q9Y3E7 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CHMP3Q9Y3E7 Y_RNA.96-201ENST00000363092 109 ntBASIC2.52□□□□□ -2.01
CHMP3Q9Y3E7 SNORD58A-201ENST00000383875 65 ntBASIC2.52□□□□□ -2.01
CHMP3Q9Y3E7 MIR513A1-201ENST00000385138 129 ntBASIC2.52□□□□□ -2.01
CHMP3Q9Y3E7 SNORD41-201ENST00000386967 70 ntBASIC2.52□□□□□ -2.01
CHMP3Q9Y3E7 RNU6-638P-201ENST00000516582 104 ntBASIC2.52□□□□□ -2.01
CHMP3Q9Y3E7 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 SNORD38.1-201ENST00000363863 68 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 RNU6-865P-201ENST00000364772 107 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 RNU6-1124P-201ENST00000384169 107 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 SNORD116-22-201ENST00000384430 92 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 MIR764-201ENST00000390811 85 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 RNA5SP225-201ENST00000410874 135 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 AL591806.2-201ENST00000433122 173 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 RPL39P39-201ENST00000455840 151 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 SNORD111.1-201ENST00000516421 86 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 RNU6-922P-201ENST00000516753 99 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 MIR4524B-201ENST00000581569 115 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 MIR4439-201ENST00000583746 80 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 MIR5002-201ENST00000584713 97 ntBASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.51□□□□□ -2.01
CHMP3Q9Y3E7 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 RNY1P13-201ENST00000365030 105 ntBASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 AL445685.2-201ENST00000422551 342 ntBASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 MIR4668-201ENST00000582284 70 ntBASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 MIR3935-201ENST00000583472 104 ntBASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 MIR3192-201ENST00000584920 77 ntBASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CHMP3Q9Y3E7 RNA5SP160-201ENST00000364866 120 ntBASIC2.49□□□□□ -2.01
CHMP3Q9Y3E7 RNY1P4-201ENST00000384595 115 ntBASIC2.49□□□□□ -2.01
CHMP3Q9Y3E7 SNORD38B-201ENST00000384690 67 ntBASIC2.49□□□□□ -2.01
CHMP3Q9Y3E7 RNU6-322P-201ENST00000516010 103 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 252.4 ms