Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNORD114-30-201ENST00000364448 72 ntBASIC2.54□□□□□ -2
COL8A1P27658 MIR660-201ENST00000385235 97 ntBASIC2.54□□□□□ -2
COL8A1P27658 RNU6-1254P-201ENST00000391266 104 ntBASIC2.54□□□□□ -2
COL8A1P27658 AL023284.1-201ENST00000403956 276 ntBASIC2.54□□□□□ -2
COL8A1P27658 RNU6-548P-201ENST00000517083 115 ntBASIC2.54□□□□□ -2
COL8A1P27658 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL8A1P27658 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.54□□□□□ -2
COL8A1P27658 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.53□□□□□ -2
COL8A1P27658 RNU1-58P-201ENST00000362413 163 ntBASIC2.53□□□□□ -2
COL8A1P27658 Y_RNA.164-201ENST00000363709 102 ntBASIC2.53□□□□□ -2
COL8A1P27658 RNU1-112P-201ENST00000364401 164 ntBASIC2.53□□□□□ -2
COL8A1P27658 RNU6-243P-201ENST00000391140 107 ntBASIC2.53□□□□□ -2
COL8A1P27658 BX276092.1-201ENST00000427368 251 ntBASIC2.53□□□□□ -2
COL8A1P27658 AC104332.2-201ENST00000429959 156 ntBASIC2.53□□□□□ -2
COL8A1P27658 SCARNA16.3-201ENST00000516595 184 ntBASIC2.53□□□□□ -2
COL8A1P27658 MIR5094-201ENST00000578766 85 ntBASIC2.53□□□□□ -2
COL8A1P27658 AC007318.2-201ENST00000620999 243 ntBASIC2.53□□□□□ -2
COL8A1P27658 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
COL8A1P27658 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
COL8A1P27658 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
COL8A1P27658 ZNF658B-202ENST00000615961 3375 ntBASIC2.53□□□□□ -2
COL8A1P27658 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2.01
COL8A1P27658 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.53□□□□□ -2.01
COL8A1P27658 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
COL8A1P27658 RNU6-330P-201ENST00000363015 107 ntBASIC2.52□□□□□ -2.01
COL8A1P27658 Y_RNA.443-201ENST00000384135 111 ntBASIC2.52□□□□□ -2.01
COL8A1P27658 RNU6-154P-201ENST00000384306 106 ntBASIC2.52□□□□□ -2.01
COL8A1P27658 RNU6-466P-201ENST00000391224 103 ntBASIC2.52□□□□□ -2.01
COL8A1P27658 RN7SKP123-201ENST00000410732 291 ntBASIC2.52□□□□□ -2.01
COL8A1P27658 AC108206.1-201ENST00000570186 4159 ntBASIC2.52□□□□□ -2.01
COL8A1P27658 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
COL8A1P27658 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL8A1P27658 RNU6-859P-201ENST00000362728 107 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 RNU6-895P-201ENST00000384125 103 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 RNU6-851P-201ENST00000384565 107 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 MIR518E-201ENST00000385252 88 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 HMGN2P39-201ENST00000398005 273 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 RNU1-143P-201ENST00000516296 146 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 AC121758.2-201ENST00000553271 193 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 AC026271.5-201ENST00000577873 130 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 MIR548AO-201ENST00000579992 96 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 MIR4764-201ENST00000580680 88 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 U1.23-201ENST00000610293 146 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 AC021506.2-201ENST00000612354 169 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 RNU1-68P-201ENST00000615382 146 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 U1.39-201ENST00000621562 146 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 AC103706.3-201ENST00000636297 85 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.51□□□□□ -2.01
COL8A1P27658 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL8A1P27658 AC073325.2-201ENST00000339545 159 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 MIRLET7F1-201ENST00000362202 87 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 RNU6-669P-201ENST00000365575 107 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 SNORA67.4-201ENST00000384688 142 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 MIR516A2-201ENST00000384888 90 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 MIR516A1-201ENST00000385033 90 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 MIR29C-201ENST00000385231 88 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
COL8A1P27658 SNORD90-201ENST00000391145 111 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
COL8A1P27658 AC107016.2-201ENST00000547968 190 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 DEFB122-202ENST00000569013 197 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 MIR4511-201ENST00000582784 87 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 MIR3616-201ENST00000584070 92 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 U6.109-201ENST00000636749 87 ntBASIC2.5□□□□□ -2.01
COL8A1P27658 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
COL8A1P27658 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL8A1P27658 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
COL8A1P27658 Y_RNA.119-201ENST00000363301 96 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 U8.9-201ENST00000365667 134 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 RNU6-291P-201ENST00000384720 107 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 RNU6-482P-201ENST00000391068 107 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 AC019129.1-201ENST00000403786 261 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.49□□□□□ -2.01
COL8A1P27658 AC092628.1-201ENST00000436250 252 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 AC079150.2-201ENST00000443733 78 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 UQCRHP3-201ENST00000451503 251 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 snoU13.17-201ENST00000458802 104 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 SCARNA20.6-201ENST00000517251 106 ntBASIC2.49□□□□□ -2.01
COL8A1P27658 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.49□□□□□ -2.01
COL8A1P27658 RNA5SP289-201ENST00000362332 137 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 Y_RNA.42-201ENST00000362660 108 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 SNORD115-3-201ENST00000363100 82 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 RNU6-340P-201ENST00000364005 107 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 AC245517.4-201ENST00000448601 281 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 AC011753.1-201ENST00000451001 220 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.48□□□□□ -2.01
COL8A1P27658 RNU6-56P-201ENST00000516986 93 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 AL627230.6-201ENST00000611129 280 ntBASIC2.48□□□□□ -2.01
COL8A1P27658 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.48□□□□□ -2.01
COL8A1P27658 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
COL8A1P27658 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
COL8A1P27658 SNORA46-201ENST00000384762 135 ntBASIC2.47□□□□□ -2.01
COL8A1P27658 MIR512-1-201ENST00000384913 84 ntBASIC2.47□□□□□ -2.01
COL8A1P27658 RN7SL75P-201ENST00000461926 281 ntBASIC2.47□□□□□ -2.01
COL8A1P27658 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.47□□□□□ -2.01
COL8A1P27658 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.47□□□□□ -2.01
COL8A1P27658 RNU6-681P-201ENST00000364012 104 ntBASIC2.46□□□□□ -2.02
COL8A1P27658 MIR520C-201ENST00000385005 87 ntBASIC2.46□□□□□ -2.02
COL8A1P27658 AL138827.1-201ENST00000402666 306 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 341.7 ms