Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU7-53P-201ENST00000516705 60 ntBASIC1.41□□□□□ -2.18
VPS4AQ9UN37 RNU6-958P-201ENST00000516995 106 ntBASIC1.41□□□□□ -2.18
VPS4AQ9UN37 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.41□□□□□ -2.18
VPS4AQ9UN37 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.41□□□□□ -2.18
VPS4AQ9UN37 AL020996.3-201ENST00000606617 222 ntBASIC1.41□□□□□ -2.18
VPS4AQ9UN37 AC011603.4-201ENST00000611325 277 ntBASIC1.41□□□□□ -2.18
VPS4AQ9UN37 RNU6-508P-201ENST00000363231 103 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 RNU1-133P-201ENST00000364867 167 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 SNORD114-22-201ENST00000365423 72 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 RPL39P39-201ENST00000455840 151 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 RNA5SP61-201ENST00000516453 100 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 AP001328.1-201ENST00000528550 176 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 CYP3A52P-201ENST00000563326 91 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 MIR548AO-201ENST00000579992 96 ntBASIC1.4□□□□□ -2.19
VPS4AQ9UN37 AL161722.3-201ENST00000605789 2983 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
VPS4AQ9UN37 SNORD18B-201ENST00000365659 72 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 SNORA20-201ENST00000384662 132 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 RNU6-1319P-201ENST00000390855 104 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 RNU6-747P-201ENST00000390928 104 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 RNU6-241P-201ENST00000391148 104 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 RNU6-177P-201ENST00000411257 104 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.39□□□□□ -2.19
VPS4AQ9UN37 RPS29P23-201ENST00000458635 123 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 Y_RNA.690-201ENST00000516603 95 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 U7.2-201ENST00000607576 63 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 Z97988.1-201ENST00000637697 135 ntBASIC1.39□□□□□ -2.19
VPS4AQ9UN37 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
VPS4AQ9UN37 RNU6-81P-201ENST00000365608 104 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 Y_RNA.430-201ENST00000384081 110 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 SNORD26-201ENST00000384147 75 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 SNORA40-201ENST00000388090 126 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 AC245047.7-201ENST00000440265 293 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.38□□□□□ -2.19
VPS4AQ9UN37 Y_RNA.692-201ENST00000516627 105 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 RN7SKP88-201ENST00000516847 250 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 AP001485.1-201ENST00000604799 199 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 AL022345.2-201ENST00000606307 135 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 7SK.8-201ENST00000612110 250 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 7SK.11-201ENST00000615477 250 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 7SK.13-201ENST00000622040 250 ntBASIC1.38□□□□□ -2.19
VPS4AQ9UN37 RNA5SP264-201ENST00000363115 107 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 RNY1P6-201ENST00000384193 109 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 Y_RNA.540-201ENST00000384638 111 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 MIR1185-1-201ENST00000408598 86 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 AL354695.1-201ENST00000427935 228 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 RNU6-947P-201ENST00000516264 106 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 RNU11-2P-201ENST00000516898 142 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 TUG1_4.1-201ENST00000619464 181 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 MIR6515-201ENST00000619843 57 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 MIR6841-201ENST00000637129 72 ntBASIC1.37□□□□□ -2.19
VPS4AQ9UN37 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
VPS4AQ9UN37 AL596211.1-201ENST00000569873 2277 ntBASIC1.36□□□□□ -2.19
VPS4AQ9UN37 MIR3910-1-201ENST00000580936 111 ntBASIC1.36□□□□□ -2.19
VPS4AQ9UN37 MIR6717-201ENST00000622747 73 ntBASIC1.36□□□□□ -2.19
VPS4AQ9UN37 SNORD114-26-201ENST00000363543 72 ntBASIC1.35□□□□□ -2.19
VPS4AQ9UN37 Y_RNA.363-201ENST00000365529 113 ntBASIC1.35□□□□□ -2.19
VPS4AQ9UN37 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
VPS4AQ9UN37 AC048334.1-201ENST00000477975 159 ntBASIC1.35□□□□□ -2.19
VPS4AQ9UN37 RNU7-70P-201ENST00000516941 66 ntBASIC1.35□□□□□ -2.19
VPS4AQ9UN37 AC021613.1-201ENST00000623880 111 ntBASIC1.35□□□□□ -2.19
VPS4AQ9UN37 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
VPS4AQ9UN37 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.35□□□□□ -2.19
VPS4AQ9UN37 MIR302B-201ENST00000362188 73 ntBASIC1.34□□□□□ -2.19
VPS4AQ9UN37 MIR342-201ENST00000362212 99 ntBASIC1.34□□□□□ -2.19
VPS4AQ9UN37 Y_RNA.114-201ENST00000363265 113 ntBASIC1.34□□□□□ -2.19
VPS4AQ9UN37 SNORD113-1-201ENST00000365321 69 ntBASIC1.34□□□□□ -2.19
VPS4AQ9UN37 RNU6-1190P-201ENST00000410811 104 ntBASIC1.34□□□□□ -2.19
VPS4AQ9UN37 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS4AQ9UN37 HSPE1P19-201ENST00000603327 295 ntBASIC1.34□□□□□ -2.19
VPS4AQ9UN37 AC108081.1-201ENST00000604358 221 ntBASIC1.34□□□□□ -2.19
VPS4AQ9UN37 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
VPS4AQ9UN37 SNORA25.3-201ENST00000363205 127 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 RNA5SP261-201ENST00000410536 106 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 Y_RNA.617-201ENST00000410920 90 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 AC090844.1-201ENST00000422019 156 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 HMGN1P33-201ENST00000432945 451 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 AL158147.1-201ENST00000443970 75 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 TMSB4XP3-201ENST00000445144 114 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS4AQ9UN37 RNU7-45P-201ENST00000459460 63 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 SNORA31.2-201ENST00000516019 134 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 Y_RNA.757-201ENST00000578934 114 ntBASIC1.33□□□□□ -2.2
VPS4AQ9UN37 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
VPS4AQ9UN37 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
VPS4AQ9UN37 Y_RNA.36-201ENST00000362602 112 ntBASIC1.32□□□□□ -2.2
VPS4AQ9UN37 MIR539-201ENST00000365690 78 ntBASIC1.32□□□□□ -2.2
VPS4AQ9UN37 RNU6-602P-201ENST00000411155 105 ntBASIC1.32□□□□□ -2.2
VPS4AQ9UN37 POLR2J4-204ENST00000418424 324 ntBASIC1.32□□□□□ -2.2
VPS4AQ9UN37 RNU6-406P-201ENST00000516470 107 ntBASIC1.32□□□□□ -2.2
VPS4AQ9UN37 MIR8065-201ENST00000620577 100 ntBASIC1.32□□□□□ -2.2
VPS4AQ9UN37 Y_RNA.294-201ENST00000364916 102 ntBASIC1.31□□□□□ -2.2
VPS4AQ9UN37 RNU6-53P-201ENST00000365367 106 ntBASIC1.31□□□□□ -2.2
VPS4AQ9UN37 MT-TN-201ENST00000387400 73 ntBASIC1.31□□□□□ -2.2
VPS4AQ9UN37 RNU6-613P-201ENST00000410412 108 ntBASIC1.31□□□□□ -2.2
VPS4AQ9UN37 RNA5SP144-201ENST00000410846 116 ntBASIC1.31□□□□□ -2.2
VPS4AQ9UN37 AC244023.1-201ENST00000426884 112 ntBASIC1.31□□□□□ -2.2
VPS4AQ9UN37 RNU6-240P-201ENST00000516098 97 ntBASIC1.31□□□□□ -2.2
VPS4AQ9UN37 IGKV1-22-201ENST00000524313 326 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 219.1 ms