Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU1-112P-201ENST00000364401 164 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 MIR9-1-201ENST00000385198 89 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 MIR1262-201ENST00000408276 93 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 snoU13.16-201ENST00000459350 104 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 RN7SL633P-201ENST00000488974 297 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 RNU6-75P-201ENST00000515944 104 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 SNORD14A-201ENST00000606526 91 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 ZNF209P-201ENST00000593450 2304 ntBASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 AC093010.3-201ENST00000570269 15214 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 MIR95-201ENST00000385072 81 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 MIR548U-201ENST00000390728 81 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 RNA5SP385-201ENST00000515947 110 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 RNU6-977P-201ENST00000516411 103 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 SNORA48.11-201ENST00000517015 89 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 MIR4511-201ENST00000582784 87 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 MIR4506-201ENST00000584693 77 ntBASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
NPAS3Q8IXF0 Y_RNA.283-201ENST00000364798 112 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 MIR516A2-201ENST00000384888 90 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 MIR516A1-201ENST00000385033 90 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 MIR942-201ENST00000401111 86 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 RNA5SP237-201ENST00000410414 113 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 RNA5SP21-201ENST00000410917 96 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 AC110620.1-201ENST00000416042 228 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 RNU6-881P-201ENST00000516813 102 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 MIR4764-201ENST00000580680 88 ntBASIC2.91□□□□□ -1.94
NPAS3Q8IXF0 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
NPAS3Q8IXF0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
NPAS3Q8IXF0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
NPAS3Q8IXF0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 Y_RNA.99-201ENST00000363138 105 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 RNA5SP493-201ENST00000364115 91 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 RNY1P2-201ENST00000364820 117 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 Y_RNA.537-201ENST00000384626 109 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 AL034345.1-201ENST00000407768 123 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 SCARNA11.3-201ENST00000517276 130 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 CYP3A52P-201ENST00000563326 91 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 AC022513.1-201ENST00000624512 117 ntBASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.95
NPAS3Q8IXF0 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 RNU6-291P-201ENST00000384720 107 ntBASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 RNU6-1067P-201ENST00000384752 107 ntBASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 AC141846.1-201ENST00000568348 142 ntBASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 AC104984.5-201ENST00000586878 94 ntBASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 AC103706.3-201ENST00000636297 85 ntBASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 Z97988.1-201ENST00000637697 135 ntBASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
NPAS3Q8IXF0 SNORD36A-201ENST00000362874 73 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 SNORD45.1-201ENST00000363181 77 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 RNU6-829P-201ENST00000363700 112 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 RNU6-1019P-201ENST00000364424 107 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 Y_RNA.236-201ENST00000364427 111 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 MIR561-201ENST00000385216 97 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 RNA5SP508-201ENST00000411327 119 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 AL513328.1-201ENST00000446460 224 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 MIR3675-201ENST00000583661 73 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 SNORD92-201ENST00000585078 85 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 AL109933.3-201ENST00000619095 188 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 AC110079.1-202ENST00000635213 138 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 MIR7157-201ENST00000635801 60 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 U6.109-201ENST00000636749 87 ntBASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
NPAS3Q8IXF0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 MIR526A1-201ENST00000384897 85 ntBASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 RNU6-243P-201ENST00000391140 107 ntBASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 RN7SKP123-201ENST00000410732 291 ntBASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 AC138749.4-201ENST00000563970 127 ntBASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 MIR6817-201ENST00000615588 66 ntBASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
NPAS3Q8IXF0 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 RNU6-23P-201ENST00000363283 107 ntBASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 RNU6-340P-201ENST00000364005 107 ntBASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 SNORD116-24-201ENST00000384549 92 ntBASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 SNORA11.4-201ENST00000408823 129 ntBASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
NPAS3Q8IXF0 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 SNORD115-3-201ENST00000363100 82 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 RNA5SP68-201ENST00000363885 119 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 Y_RNA.207-201ENST00000364142 106 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 RNU6-571P-201ENST00000384128 107 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 MIR512-1-201ENST00000384913 84 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 RNU6-466P-201ENST00000391224 103 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 RNU6-1254P-201ENST00000391266 104 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms