Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AP003327.1-201ENST00000529684 127 ntBASIC2.2□□□□□ -2.06
UBE3DQ7Z6J8 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.2□□□□□ -2.06
UBE3DQ7Z6J8 MIR3935-201ENST00000583472 104 ntBASIC2.2□□□□□ -2.06
UBE3DQ7Z6J8 MIR4251-201ENST00000635819 61 ntBASIC2.2□□□□□ -2.06
UBE3DQ7Z6J8 SNORD114-10-201ENST00000363409 72 ntBASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 SNORD38.1-201ENST00000363863 68 ntBASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 RNU6-203P-201ENST00000384038 104 ntBASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 RNU2-40P-201ENST00000410833 196 ntBASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 AL445685.2-201ENST00000422551 342 ntBASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 JTBP1-201ENST00000441314 247 ntBASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 AC055731.1-201ENST00000474387 401 ntBASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.19□□□□□ -2.06
UBE3DQ7Z6J8 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 MIR449A-201ENST00000362113 91 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 SNORD116-10-201ENST00000363791 102 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 SNORD114-30-201ENST00000364448 72 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 RNU6-342P-201ENST00000384521 104 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 SNORD38B-201ENST00000384690 67 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 MIR206-201ENST00000384872 86 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 AL357312.1-201ENST00000603879 298 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 SNORD38B-202ENST00000625943 69 ntBASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.18□□□□□ -2.06
UBE3DQ7Z6J8 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 RNU4-82P-201ENST00000362443 140 ntBASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 SNORD23.1-201ENST00000408212 104 ntBASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 MIR6895-201ENST00000613497 78 ntBASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 MIR6766-201ENST00000622641 72 ntBASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 AC091304.10-201ENST00000641554 121 ntBASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.17□□□□□ -2.06
UBE3DQ7Z6J8 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 Y_RNA.17-201ENST00000362433 111 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 Y_RNA.140-201ENST00000363474 103 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 RNU6-813P-201ENST00000384691 107 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 MIR513A1-201ENST00000385138 129 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 Y_RNA.593-201ENST00000410292 98 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 AC090844.1-201ENST00000422019 156 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 UBE2DNL-203ENST00000474922 222 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 RNU7-79P-201ENST00000516082 62 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 SNORD111.1-201ENST00000516421 86 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 RNA5SP24-201ENST00000516478 95 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 RNU6-1006P-201ENST00000516998 103 ntBASIC2.16□□□□□ -2.06
UBE3DQ7Z6J8 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.15□□□□□ -2.06
UBE3DQ7Z6J8 SNORA67.1-201ENST00000364749 141 ntBASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 RNU6-865P-201ENST00000364772 107 ntBASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 RNA5SP173-201ENST00000364857 136 ntBASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 SNORD38.2-201ENST00000384470 69 ntBASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 MIR548AO-201ENST00000579992 96 ntBASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
UBE3DQ7Z6J8 Y_RNA.219-201ENST00000364232 113 ntBASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 RNU6-675P-201ENST00000384236 104 ntBASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 SNORD116-22-201ENST00000384430 92 ntBASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 RPS29P28-201ENST00000446439 141 ntBASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 Y_RNA.685-201ENST00000516532 108 ntBASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 RNU7-137P-201ENST00000516788 62 ntBASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 AC022254.1-201ENST00000567857 235 ntBASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
UBE3DQ7Z6J8 RNA5SP259-201ENST00000365541 109 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 MIR221-201ENST00000385135 110 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 RNU4-53P-201ENST00000410828 140 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 BTF3P4-201ENST00000418852 495 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 SNORD67.1-201ENST00000516618 108 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 MIR5694-201ENST00000581190 76 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 MIR548Z-201ENST00000584743 97 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 MIR376B-201ENST00000614515 100 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.13□□□□□ -2.07
UBE3DQ7Z6J8 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 MIR494-201ENST00000349529 81 ntBASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 Y_RNA.98-201ENST00000363109 102 ntBASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 Y_RNA.467-201ENST00000384297 102 ntBASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 UBL5P1-201ENST00000507979 193 ntBASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 RNU7-41P-201ENST00000515917 61 ntBASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 RNU6-250P-201ENST00000516958 103 ntBASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 IGLL4P-201ENST00000614590 133 ntBASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.12□□□□□ -2.07
UBE3DQ7Z6J8 RNY1P1-201ENST00000364372 112 ntBASIC2.11□□□□□ -2.07
UBE3DQ7Z6J8 Y_RNA.448-201ENST00000384185 108 ntBASIC2.11□□□□□ -2.07
UBE3DQ7Z6J8 U8.15-201ENST00000390947 134 ntBASIC2.11□□□□□ -2.07
UBE3DQ7Z6J8 AC244636.1-201ENST00000421152 228 ntBASIC2.11□□□□□ -2.07
UBE3DQ7Z6J8 RNU6-162P-201ENST00000516228 103 ntBASIC2.11□□□□□ -2.07
UBE3DQ7Z6J8 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.11□□□□□ -2.07
UBE3DQ7Z6J8 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.11□□□□□ -2.07
UBE3DQ7Z6J8 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
UBE3DQ7Z6J8 RNY1P10-201ENST00000363268 113 ntBASIC2.1□□□□□ -2.07
UBE3DQ7Z6J8 SNORD58A-201ENST00000383875 65 ntBASIC2.1□□□□□ -2.07
UBE3DQ7Z6J8 SNORD41-201ENST00000386967 70 ntBASIC2.1□□□□□ -2.07
UBE3DQ7Z6J8 RNU6-1275P-201ENST00000391087 107 ntBASIC2.1□□□□□ -2.07
UBE3DQ7Z6J8 RNA5SP237-201ENST00000410414 113 ntBASIC2.1□□□□□ -2.07
UBE3DQ7Z6J8 RPL31P63-201ENST00000422565 375 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms