Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SNORD116-19-201ENST00000384729 92 ntBASIC1.31□□□□□ -2.2
SOX2P48431 MIR1323-201ENST00000408090 73 ntBASIC1.31□□□□□ -2.2
SOX2P48431 RNA5SP144-201ENST00000410846 116 ntBASIC1.31□□□□□ -2.2
SOX2P48431 AL022718.1-201ENST00000412004 84 ntBASIC1.31□□□□□ -2.2
SOX2P48431 AL606753.1-201ENST00000427435 87 ntBASIC1.31□□□□□ -2.2
SOX2P48431 AC008267.6-201ENST00000441664 139 ntBASIC1.31□□□□□ -2.2
SOX2P48431 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.31□□□□□ -2.2
SOX2P48431 RNU7-164P-201ENST00000459221 62 ntBASIC1.31□□□□□ -2.2
SOX2P48431 RN7SKP179-201ENST00000516126 217 ntBASIC1.31□□□□□ -2.2
SOX2P48431 RNU6-62P-201ENST00000516526 102 ntBASIC1.31□□□□□ -2.2
SOX2P48431 RNU6-295P-201ENST00000516901 104 ntBASIC1.31□□□□□ -2.2
SOX2P48431 MIR4305-201ENST00000583252 102 ntBASIC1.31□□□□□ -2.2
SOX2P48431 MIR8065-201ENST00000620577 100 ntBASIC1.31□□□□□ -2.2
SOX2P48431 U2.22-201ENST00000636441 106 ntBASIC1.31□□□□□ -2.2
SOX2P48431 SNORA22.1-201ENST00000362701 134 ntBASIC1.3□□□□□ -2.2
SOX2P48431 RNU1-42P-201ENST00000364033 160 ntBASIC1.3□□□□□ -2.2
SOX2P48431 RNU6-396P-201ENST00000365369 105 ntBASIC1.3□□□□□ -2.2
SOX2P48431 SNORD38B-201ENST00000384690 67 ntBASIC1.3□□□□□ -2.2
SOX2P48431 Y_RNA.617-201ENST00000410920 90 ntBASIC1.3□□□□□ -2.2
SOX2P48431 AC048334.1-201ENST00000477975 159 ntBASIC1.3□□□□□ -2.2
SOX2P48431 RNU6-1061P-201ENST00000516530 99 ntBASIC1.3□□□□□ -2.2
SOX2P48431 RNU11-2P-201ENST00000516898 142 ntBASIC1.3□□□□□ -2.2
SOX2P48431 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.3□□□□□ -2.2
SOX2P48431 AP003716.2-201ENST00000528260 108 ntBASIC1.3□□□□□ -2.2
SOX2P48431 AP000942.3-201ENST00000603702 160 ntBASIC1.3□□□□□ -2.2
SOX2P48431 SNORD38B-202ENST00000625943 69 ntBASIC1.3□□□□□ -2.2
SOX2P48431 Y_RNA.127-201ENST00000363386 109 ntBASIC1.29□□□□□ -2.2
SOX2P48431 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.29□□□□□ -2.2
SOX2P48431 MIR1289-2-201ENST00000408360 111 ntBASIC1.29□□□□□ -2.2
SOX2P48431 MIR1302-7-201ENST00000408841 72 ntBASIC1.29□□□□□ -2.2
SOX2P48431 POLR2J4-204ENST00000418424 324 ntBASIC1.29□□□□□ -2.2
SOX2P48431 SNORA31.2-201ENST00000516019 134 ntBASIC1.29□□□□□ -2.2
SOX2P48431 MIR2115-201ENST00000516657 100 ntBASIC1.29□□□□□ -2.2
SOX2P48431 MIR4255-201ENST00000579351 72 ntBASIC1.29□□□□□ -2.2
SOX2P48431 MIR6841-201ENST00000637129 72 ntBASIC1.29□□□□□ -2.2
SOX2P48431 Y_RNA.298-201ENST00000364960 107 ntBASIC1.28□□□□□ -2.2
SOX2P48431 SNORD58C-201ENST00000365223 64 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNU6-22P-201ENST00000384355 107 ntBASIC1.28□□□□□ -2.2
SOX2P48431 MIR1263-201ENST00000408324 86 ntBASIC1.28□□□□□ -2.2
SOX2P48431 MIR1185-1-201ENST00000408598 86 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNU6-602P-201ENST00000411155 105 ntBASIC1.28□□□□□ -2.2
SOX2P48431 AC090844.1-201ENST00000422019 156 ntBASIC1.28□□□□□ -2.2
SOX2P48431 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.28□□□□□ -2.2
SOX2P48431 RPS29P23-201ENST00000458635 123 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNU7-107P-201ENST00000459121 61 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNU6-772P-201ENST00000516042 105 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNU6-1333P-201ENST00000516162 93 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNA5SP61-201ENST00000516453 100 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNY4P20-201ENST00000516678 93 ntBASIC1.28□□□□□ -2.2
SOX2P48431 IGKV1-22-201ENST00000524313 326 ntBASIC1.28□□□□□ -2.2
SOX2P48431 PRELID3BP2-201ENST00000605362 201 ntBASIC1.28□□□□□ -2.2
SOX2P48431 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.28□□□□□ -2.2
SOX2P48431 RNA5SP136-201ENST00000410906 107 ntBASIC1.27□□□□□ -2.21
SOX2P48431 AL354695.1-201ENST00000427935 228 ntBASIC1.27□□□□□ -2.21
SOX2P48431 AC108729.3-201ENST00000513484 108 ntBASIC1.27□□□□□ -2.21
SOX2P48431 RNU7-123P-201ENST00000515911 60 ntBASIC1.27□□□□□ -2.21
SOX2P48431 RNU6-781P-201ENST00000516377 101 ntBASIC1.27□□□□□ -2.21
SOX2P48431 RNU2-35P-201ENST00000516446 142 ntBASIC1.27□□□□□ -2.21
SOX2P48431 RNU6-659P-201ENST00000516454 104 ntBASIC1.27□□□□□ -2.21
SOX2P48431 Y_RNA.338-201ENST00000365320 114 ntBASIC1.26□□□□□ -2.21
SOX2P48431 MIR517C-201ENST00000385103 95 ntBASIC1.26□□□□□ -2.21
SOX2P48431 RNU7-113P-201ENST00000459273 62 ntBASIC1.26□□□□□ -2.21
SOX2P48431 RNU6-479P-201ENST00000516348 105 ntBASIC1.26□□□□□ -2.21
SOX2P48431 Y_RNA.712-201ENST00000517011 92 ntBASIC1.26□□□□□ -2.21
SOX2P48431 AP000753.3-201ENST00000604083 169 ntBASIC1.26□□□□□ -2.21
SOX2P48431 AL365222.1-201ENST00000614661 98 ntBASIC1.26□□□□□ -2.21
SOX2P48431 RNU6-1154P-201ENST00000391001 104 ntBASIC1.25□□□□□ -2.21
SOX2P48431 SNORA67.6-201ENST00000391093 99 ntBASIC1.25□□□□□ -2.21
SOX2P48431 SNORA26.9-201ENST00000391322 122 ntBASIC1.25□□□□□ -2.21
SOX2P48431 RNU6-313P-201ENST00000516317 112 ntBASIC1.25□□□□□ -2.21
SOX2P48431 AC004812.1-201ENST00000540773 146 ntBASIC1.25□□□□□ -2.21
SOX2P48431 SNORD53B-201ENST00000577887 78 ntBASIC1.25□□□□□ -2.21
SOX2P48431 MIR4264-201ENST00000583520 66 ntBASIC1.25□□□□□ -2.21
SOX2P48431 AC025166.1-201ENST00000612411 163 ntBASIC1.25□□□□□ -2.21
SOX2P48431 MIR6516-201ENST00000630554 81 ntBASIC1.25□□□□□ -2.21
SOX2P48431 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SOX2P48431 MIR26B-201ENST00000362251 77 ntBASIC1.24□□□□□ -2.21
SOX2P48431 MIR337-201ENST00000362281 93 ntBASIC1.24□□□□□ -2.21
SOX2P48431 Y_RNA.171-201ENST00000363760 102 ntBASIC1.24□□□□□ -2.21
SOX2P48431 RNA5SP99-201ENST00000364020 114 ntBASIC1.24□□□□□ -2.21
SOX2P48431 Y_RNA.261-201ENST00000364631 102 ntBASIC1.24□□□□□ -2.21
SOX2P48431 Y_RNA.346-201ENST00000365385 112 ntBASIC1.24□□□□□ -2.21
SOX2P48431 Y_RNA.525-201ENST00000384570 113 ntBASIC1.24□□□□□ -2.21
SOX2P48431 Y_RNA.528-201ENST00000384575 108 ntBASIC1.24□□□□□ -2.21
SOX2P48431 Y_RNA.531-201ENST00000384589 121 ntBASIC1.24□□□□□ -2.21
SOX2P48431 MT-TN-201ENST00000387400 73 ntBASIC1.24□□□□□ -2.21
SOX2P48431 RNU6-1168P-201ENST00000390831 104 ntBASIC1.24□□□□□ -2.21
SOX2P48431 RNU6-910P-201ENST00000390844 107 ntBASIC1.24□□□□□ -2.21
SOX2P48431 COX6CP6-201ENST00000490840 228 ntBASIC1.24□□□□□ -2.21
SOX2P48431 AC113410.1-201ENST00000505029 247 ntBASIC1.24□□□□□ -2.21
SOX2P48431 RNU6-1258P-201ENST00000516911 111 ntBASIC1.24□□□□□ -2.21
SOX2P48431 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.24□□□□□ -2.21
SOX2P48431 MIR7974-201ENST00000615835 79 ntBASIC1.24□□□□□ -2.21
SOX2P48431 SEPT14P17-201ENST00000617978 177 ntBASIC1.24□□□□□ -2.21
SOX2P48431 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SOX2P48431 Y_RNA.140-201ENST00000363474 103 ntBASIC1.23□□□□□ -2.21
SOX2P48431 SNORA80D-201ENST00000384488 135 ntBASIC1.23□□□□□ -2.21
SOX2P48431 RNU6-1081P-201ENST00000384537 107 ntBASIC1.23□□□□□ -2.21
SOX2P48431 MIRLET7F2-201ENST00000385277 83 ntBASIC1.23□□□□□ -2.21
SOX2P48431 MIR759-201ENST00000390224 91 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms