Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC073325.2-201ENST00000339545 159 ntBASIC5.07□□□□□ -1.6
MSH5O43196 RNU6-924P-201ENST00000362926 108 ntBASIC5.07□□□□□ -1.6
MSH5O43196 RNU6-1279P-201ENST00000383917 103 ntBASIC5.07□□□□□ -1.6
MSH5O43196 RPL30P7-201ENST00000479312 323 ntBASIC5.07□□□□□ -1.6
MSH5O43196 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH5O43196 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH5O43196 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSH5O43196 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC5.06□□□□□ -1.6
MSH5O43196 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
MSH5O43196 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
MSH5O43196 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH5O43196 MIR216B-201ENST00000390186 82 ntBASIC5.06□□□□□ -1.6
MSH5O43196 RNA5SP94-201ENST00000516917 108 ntBASIC5.06□□□□□ -1.6
MSH5O43196 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH5O43196 MIR6082-201ENST00000613604 109 ntBASIC5.06□□□□□ -1.6
MSH5O43196 MIR548O2-201ENST00000616090 70 ntBASIC5.06□□□□□ -1.6
MSH5O43196 AC110079.1-202ENST00000635213 138 ntBASIC5.06□□□□□ -1.6
MSH5O43196 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH5O43196 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH5O43196 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH5O43196 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH5O43196 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
MSH5O43196 Y_RNA.246-201ENST00000364495 108 ntBASIC5.05□□□□□ -1.6
MSH5O43196 SNORA48.2-201ENST00000390926 124 ntBASIC5.05□□□□□ -1.6
MSH5O43196 RNA5SP437-201ENST00000517249 129 ntBASIC5.05□□□□□ -1.6
MSH5O43196 AC018659.1-201ENST00000551083 169 ntBASIC5.05□□□□□ -1.6
MSH5O43196 MIR7702-201ENST00000621931 59 ntBASIC5.05□□□□□ -1.6
MSH5O43196 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH5O43196 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH5O43196 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSH5O43196 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
MSH5O43196 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSH5O43196 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSH5O43196 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSH5O43196 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSH5O43196 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSH5O43196 RPS29P31-201ENST00000446147 164 ntBASIC5.04□□□□□ -1.6
MSH5O43196 MIR4490-201ENST00000582647 84 ntBASIC5.04□□□□□ -1.6
MSH5O43196 MIR3651-201ENST00000630427 90 ntBASIC5.04□□□□□ -1.6
MSH5O43196 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
MSH5O43196 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH5O43196 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
MSH5O43196 MIR184-201ENST00000384962 84 ntBASIC5.03□□□□□ -1.6
MSH5O43196 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH5O43196 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSH5O43196 RNU6-1246P-201ENST00000391064 107 ntBASIC5.02□□□□□ -1.61
MSH5O43196 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH5O43196 RNU7-74P-201ENST00000459104 62 ntBASIC5.02□□□□□ -1.61
MSH5O43196 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSH5O43196 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSH5O43196 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC5.02□□□□□ -1.61
MSH5O43196 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH5O43196 SNORA9.1-201ENST00000362412 131 ntBASIC5.01□□□□□ -1.61
MSH5O43196 AL159169.1-201ENST00000421119 127 ntBASIC5.01□□□□□ -1.61
MSH5O43196 MIR3124-201ENST00000582636 67 ntBASIC5.01□□□□□ -1.61
MSH5O43196 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH5O43196 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC5□□□□□ -1.61
MSH5O43196 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
MSH5O43196 RNU6-1204P-201ENST00000363948 107 ntBASIC5□□□□□ -1.61
MSH5O43196 MIR128-1-201ENST00000384921 82 ntBASIC5□□□□□ -1.61
MSH5O43196 snoU13.13-201ENST00000458842 104 ntBASIC5□□□□□ -1.61
MSH5O43196 RNU7-143P-201ENST00000516781 65 ntBASIC5□□□□□ -1.61
MSH5O43196 MIR548AG2-201ENST00000581228 64 ntBASIC5□□□□□ -1.61
MSH5O43196 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC5□□□□□ -1.61
MSH5O43196 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSH5O43196 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSH5O43196 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.99□□□□□ -1.61
MSH5O43196 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSH5O43196 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
MSH5O43196 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSH5O43196 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSH5O43196 RNU1-58P-201ENST00000362413 163 ntBASIC4.99□□□□□ -1.61
MSH5O43196 snoU13.27-201ENST00000459278 104 ntBASIC4.99□□□□□ -1.61
MSH5O43196 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.98□□□□□ -1.61
MSH5O43196 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSH5O43196 RNA5SP399-201ENST00000364003 117 ntBASIC4.98□□□□□ -1.61
MSH5O43196 SNORD116-16-201ENST00000384533 92 ntBASIC4.98□□□□□ -1.61
MSH5O43196 RNU6-721P-201ENST00000410155 105 ntBASIC4.98□□□□□ -1.61
MSH5O43196 SNORD111.1-201ENST00000516421 86 ntBASIC4.98□□□□□ -1.61
MSH5O43196 MIR4738-201ENST00000579134 87 ntBASIC4.98□□□□□ -1.61
MSH5O43196 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
MSH5O43196 RNA5SP50-201ENST00000363731 107 ntBASIC4.97□□□□□ -1.61
MSH5O43196 Y_RNA.250-201ENST00000364542 110 ntBASIC4.97□□□□□ -1.61
MSH5O43196 MIR520A-201ENST00000384862 85 ntBASIC4.97□□□□□ -1.61
MSH5O43196 MT-TN-201ENST00000387400 73 ntBASIC4.97□□□□□ -1.61
MSH5O43196 RPL23AP94-201ENST00000512518 302 ntBASIC4.97□□□□□ -1.61
MSH5O43196 5S_rRNA.15-201ENST00000611169 127 ntBASIC4.97□□□□□ -1.61
MSH5O43196 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.61
MSH5O43196 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
MSH5O43196 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH5O43196 RNA5SP245-201ENST00000364239 121 ntBASIC4.96□□□□□ -1.62
MSH5O43196 SNORA68.1-201ENST00000364537 132 ntBASIC4.96□□□□□ -1.62
MSH5O43196 RNU6-1008P-201ENST00000384160 104 ntBASIC4.96□□□□□ -1.62
MSH5O43196 RNU7-13P-201ENST00000516413 62 ntBASIC4.96□□□□□ -1.62
MSH5O43196 MIR8058-201ENST00000615737 89 ntBASIC4.96□□□□□ -1.62
MSH5O43196 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.96□□□□□ -1.62
MSH5O43196 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH5O43196 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSH5O43196 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
MSH5O43196 RNU6-1126P-201ENST00000384002 107 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 190.4 ms