Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR4276-201ENST00000584832 70 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS9D1Q9Y2B5 AC245517.4-201ENST00000448601 281 ntBASIC3.28□□□□□ -1.88
VPS9D1Q9Y2B5 MIR4511-201ENST00000582784 87 ntBASIC3.28□□□□□ -1.88
VPS9D1Q9Y2B5 AC021506.2-201ENST00000612354 169 ntBASIC3.28□□□□□ -1.88
VPS9D1Q9Y2B5 RNU1-70P-201ENST00000362618 164 ntBASIC3.27□□□□□ -1.89
VPS9D1Q9Y2B5 Y_RNA.42-201ENST00000362660 108 ntBASIC3.27□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6-340P-201ENST00000364005 107 ntBASIC3.27□□□□□ -1.89
VPS9D1Q9Y2B5 Y_RNA.371-201ENST00000365591 113 ntBASIC3.27□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6-805P-201ENST00000365643 106 ntBASIC3.27□□□□□ -1.89
VPS9D1Q9Y2B5 SNORA64.4-201ENST00000516632 81 ntBASIC3.27□□□□□ -1.89
VPS9D1Q9Y2B5 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS9D1Q9Y2B5 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6-681P-201ENST00000364012 104 ntBASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 SNORD45A-201ENST00000384512 84 ntBASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 MIR633-201ENST00000384821 98 ntBASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 RN7SL442P-201ENST00000473804 320 ntBASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 MIR3675-201ENST00000583661 73 ntBASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 MIR7975-201ENST00000619350 68 ntBASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.26□□□□□ -1.89
VPS9D1Q9Y2B5 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 MIR34B-201ENST00000385076 84 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6ATAC42P-201ENST00000408637 95 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 RNA5SP293-201ENST00000410527 113 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 AC115115.1-201ENST00000449927 248 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 SNORA59A-201ENST00000459326 152 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 RNA5SP217-201ENST00000515959 91 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 AC121758.2-201ENST00000553271 193 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 AL096861.1-201ENST00000610899 123 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 AL627230.6-201ENST00000611129 280 ntBASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS9D1Q9Y2B5 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 RNU1-33P-201ENST00000364249 162 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6-669P-201ENST00000365575 107 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 MIR491-201ENST00000384877 84 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 MIR520C-201ENST00000385005 87 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 MIR29C-201ENST00000385231 88 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 RNA5SP229-201ENST00000410809 99 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 AC110620.1-201ENST00000416042 228 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 RPS29P12-201ENST00000460178 152 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 MIR3935-201ENST00000583472 104 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 MIR8053-201ENST00000613344 75 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 MIR4251-201ENST00000635819 61 ntBASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS9D1Q9Y2B5 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 MIR337-201ENST00000362281 93 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6-957P-201ENST00000363652 99 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 Y_RNA.207-201ENST00000364142 106 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6-1051P-201ENST00000365471 102 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 RNU1-101P-201ENST00000391171 127 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 RPS27P29-201ENST00000463110 252 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 SNORA74D-201ENST00000516404 141 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 RNU6-881P-201ENST00000516813 102 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 MIR4709-201ENST00000577272 72 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 SCARNA4.1-201ENST00000628597 123 ntBASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS9D1Q9Y2B5 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 AL161431.1-201ENST00000618966 4205 ntBASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 SNORD56.3-201ENST00000363507 71 ntBASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 RNY4P3-201ENST00000365254 95 ntBASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 RNU2-7P-201ENST00000410794 178 ntBASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 AC011753.1-201ENST00000451001 220 ntBASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 AC092185.1-201ENST00000491371 97 ntBASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 UBL5P2-201ENST00000583788 219 ntBASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
VPS9D1Q9Y2B5 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
VPS9D1Q9Y2B5 snoU13.2-201ENST00000459201 104 ntBASIC3.21□□□□□ -1.9
VPS9D1Q9Y2B5 MIR3616-201ENST00000584070 92 ntBASIC3.21□□□□□ -1.9
VPS9D1Q9Y2B5 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS9D1Q9Y2B5 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
VPS9D1Q9Y2B5 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS9D1Q9Y2B5 RNU6-1216P-201ENST00000362590 107 ntBASIC3.2□□□□□ -1.9
VPS9D1Q9Y2B5 MIR520A-201ENST00000384862 85 ntBASIC3.2□□□□□ -1.9
VPS9D1Q9Y2B5 BX510359.4-201ENST00000423750 193 ntBASIC3.2□□□□□ -1.9
VPS9D1Q9Y2B5 RNU7-106P-201ENST00000459514 67 ntBASIC3.2□□□□□ -1.9
VPS9D1Q9Y2B5 SNORA70.24-201ENST00000517233 118 ntBASIC3.2□□□□□ -1.9
VPS9D1Q9Y2B5 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 SNORD45.1-201ENST00000363181 77 ntBASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 RNU6-525P-201ENST00000363685 104 ntBASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 MIR483-201ENST00000385070 76 ntBASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS9D1Q9Y2B5 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 192 ms