Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNA5SP445-201ENST00000515889 115 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 AC121758.2-201ENST00000553271 193 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 MIR3945-201ENST00000581853 98 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 AL096840.1-201ENST00000603287 93 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 SNORD38B-202ENST00000625943 69 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC140Q96MF4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC140Q96MF4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC140Q96MF4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC140Q96MF4 MIR6073-201ENST00000352083 89 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 SNORD33-201ENST00000362761 85 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 RNA5SP48-201ENST00000363969 126 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 RNU6-1107P-201ENST00000364817 104 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 Y_RNA.354-201ENST00000365448 111 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 RNU6-1237P-201ENST00000384777 107 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 RNU4-69P-201ENST00000410677 143 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 RNU6-250P-201ENST00000516958 103 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 MIR548AE2-201ENST00000583456 67 ntBASIC1.87□□□□□ -2.11
CCDC140Q96MF4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.87□□□□□ -2.11
CCDC140Q96MF4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC140Q96MF4 Y_RNA.281-201ENST00000364774 94 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 Y_RNA.299-201ENST00000364973 94 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 AL513328.1-201ENST00000446460 224 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 IGKV3-31-201ENST00000523109 329 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 MIR3124-201ENST00000582636 67 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC140Q96MF4 PRELID3BP2-201ENST00000605362 201 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 AC067747.1-201ENST00000608026 250 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 AC087741.2-201ENST00000619415 172 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 MIR1291-201ENST00000627649 87 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 AC016717.2-201ENST00000609089 5141 ntBASIC1.86□□□□□ -2.11
CCDC140Q96MF4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC140Q96MF4 SNORD115-2-201ENST00000362842 82 ntBASIC1.85□□□□□ -2.11
CCDC140Q96MF4 Y_RNA.85-201ENST00000363014 111 ntBASIC1.85□□□□□ -2.11
CCDC140Q96MF4 SNORD115-20-201ENST00000365099 82 ntBASIC1.85□□□□□ -2.11
CCDC140Q96MF4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC140Q96MF4 AC027119.1-201ENST00000440877 241 ntBASIC1.85□□□□□ -2.11
CCDC140Q96MF4 snoU13.25-201ENST00000458945 104 ntBASIC1.85□□□□□ -2.11
CCDC140Q96MF4 SNORD53-201ENST00000579969 78 ntBASIC1.85□□□□□ -2.11
CCDC140Q96MF4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.11
CCDC140Q96MF4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC140Q96MF4 MIR21-201ENST00000362134 72 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 RNU6-153P-201ENST00000364422 104 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 SNORD114-30-201ENST00000364448 72 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 RNU6-342P-201ENST00000384521 104 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 SNORD77B-201ENST00000391112 67 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 RPL31P63-201ENST00000422565 375 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC140Q96MF4 AL133373.1-201ENST00000497098 94 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 AC026436.1-201ENST00000510537 270 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 RNU1-40P-201ENST00000516816 164 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 RNU1-97P-201ENST00000516872 164 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 MIR3198-2-201ENST00000577868 80 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 MIR4679-2-201ENST00000578358 77 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 MIR3664-201ENST00000579074 99 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 AC104984.5-201ENST00000586878 94 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
CCDC140Q96MF4 MIR8065-201ENST00000620577 100 ntBASIC1.84□□□□□ -2.11
CCDC140Q96MF4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC1.84□□□□□ -2.12
CCDC140Q96MF4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.12
CCDC140Q96MF4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC140Q96MF4 Y_RNA.116-201ENST00000363292 103 ntBASIC1.83□□□□□ -2.12
CCDC140Q96MF4 SNORA18-201ENST00000384416 132 ntBASIC1.83□□□□□ -2.12
CCDC140Q96MF4 AC008834.1-201ENST00000511612 175 ntBASIC1.83□□□□□ -2.12
CCDC140Q96MF4 AC008413.1-201ENST00000511864 177 ntBASIC1.83□□□□□ -2.12
CCDC140Q96MF4 uc_338.28-201ENST00000612082 187 ntBASIC1.83□□□□□ -2.12
CCDC140Q96MF4 Y_RNA.49-201ENST00000362714 112 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 RNU1-78P-201ENST00000391248 165 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 RNA5SP181-201ENST00000410246 98 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 SNORA31.11-201ENST00000516528 139 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 AC068339.1-201ENST00000526965 141 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 AP000942.3-201ENST00000603702 160 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 Y_RNA.773-201ENST00000607168 90 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 AC046143.2-201ENST00000609789 160 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 AL590808.1-201ENST00000618696 141 ntBASIC1.82□□□□□ -2.12
CCDC140Q96MF4 RNU6-396P-201ENST00000365369 105 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RNU6-616P-201ENST00000384353 107 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RNU6-816P-201ENST00000390914 107 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RNU6-1268P-201ENST00000391214 107 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RNU6-1239P-201ENST00000391310 107 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 MIR1302-7-201ENST00000408841 72 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 AC244023.1-201ENST00000426884 112 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RPL39P25-201ENST00000449384 154 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RPL39P34-201ENST00000477141 156 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RPL30P7-201ENST00000479312 323 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RNA5SP24-201ENST00000516478 95 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 MIR514B-201ENST00000516774 80 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 AL512310.8-201ENST00000550183 120 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 AC242498.1-201ENST00000604134 111 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 MIR1255B1-201ENST00000636325 63 ntBASIC1.81□□□□□ -2.12
CCDC140Q96MF4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC140Q96MF4 MIR450A1-201ENST00000362262 91 ntBASIC1.8□□□□□ -2.12
CCDC140Q96MF4 RNU6-755P-201ENST00000364400 103 ntBASIC1.8□□□□□ -2.12
CCDC140Q96MF4 U8.6-201ENST00000364939 135 ntBASIC1.8□□□□□ -2.12
CCDC140Q96MF4 RNU6-1014P-201ENST00000383940 103 ntBASIC1.8□□□□□ -2.12
CCDC140Q96MF4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
CCDC140Q96MF4 RNU6-1086P-201ENST00000410930 100 ntBASIC1.8□□□□□ -2.12
CCDC140Q96MF4 MIR1270-201ENST00000459320 83 ntBASIC1.8□□□□□ -2.12
CCDC140Q96MF4 MIR5007-201ENST00000583098 95 ntBASIC1.8□□□□□ -2.12
CCDC140Q96MF4 AL137847.3-201ENST00000611521 109 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms