Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 AC009487.2-201ENST00000420969 6821 ntBASIC3.01□□□□□ -1.93
NPAS3Q8IXF0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
NPAS3Q8IXF0 SNORA46-201ENST00000384762 135 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 MIR592-201ENST00000384959 97 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3□□□□□ -1.93
NPAS3Q8IXF0 RNU6-205P-201ENST00000390858 107 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 RNU4ATAC9P-201ENST00000517146 126 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 RNU6-667P-201ENST00000517186 102 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 AC133485.1-201ENST00000567176 124 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 MIR3945-201ENST00000581853 98 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 AC104996.3-201ENST00000590718 94 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3□□□□□ -1.93
NPAS3Q8IXF0 AP000753.3-201ENST00000604083 169 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 SNORA28-201ENST00000606769 126 ntBASIC3□□□□□ -1.93
NPAS3Q8IXF0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 RNA5SP432-201ENST00000362480 116 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 SNORA25.4-201ENST00000363666 124 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 Y_RNA.443-201ENST00000384135 111 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 Y_RNA.491-201ENST00000384417 107 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 SNORD45A-201ENST00000384512 84 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 AC027119.1-201ENST00000440877 241 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 RPL23AP6-201ENST00000446637 472 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 UQCRHP3-201ENST00000451503 251 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 SNORD109B-201ENST00000458961 67 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 SNORD109A-201ENST00000459128 67 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 MIR4500-201ENST00000579472 76 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 MIR3064-201ENST00000581130 66 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 UCA1.1-201ENST00000620952 75 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 AC006111.3-201ENST00000622137 383 ntBASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.99□□□□□ -1.93
NPAS3Q8IXF0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 MAPK10-362ENST00000641864 4484 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 RNY1P13-201ENST00000365030 105 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 MIR136-201ENST00000385207 82 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 RPS27P21-201ENST00000486977 252 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 SNORA31.10-201ENST00000516482 106 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 RNA5SP168-201ENST00000516642 112 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 RNU6-850P-201ENST00000516934 103 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 YWHAEP2-201ENST00000580066 112 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 YWHAEP3-201ENST00000582767 121 ntBASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.98□□□□□ -1.93
NPAS3Q8IXF0 MIRLET7F1-201ENST00000362202 87 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 RNU6-833P-201ENST00000363486 107 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 Y_RNA.371-201ENST00000365591 113 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 RNA5SP274-201ENST00000410484 108 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 RN7SL75P-201ENST00000461926 281 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 AC018868.1-201ENST00000491307 315 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 AL356280.1-201ENST00000603614 379 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 MIR8055-201ENST00000610739 97 ntBASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
NPAS3Q8IXF0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 RNU6-681P-201ENST00000364012 104 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 Y_RNA.354-201ENST00000365448 111 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 RNU6-1072P-201ENST00000384703 107 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 RNU6-443P-201ENST00000384780 107 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 RNU6-1077P-201ENST00000410506 102 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 BX276092.1-201ENST00000427368 251 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 snoU13.17-201ENST00000458802 104 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 SNORD123-201ENST00000459473 70 ntBASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
NPAS3Q8IXF0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 Y_RNA.36-201ENST00000362602 112 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 RNU6-154P-201ENST00000384306 106 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 MIR196B-201ENST00000384852 84 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 HSPE1P9-201ENST00000440046 311 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 CYP2C59P-201ENST00000457790 269 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 MIR4474-201ENST00000579189 78 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 MIR4435-1-201ENST00000582552 80 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 MIR6715A-201ENST00000615929 79 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 MIR7515-201ENST00000637837 67 ntBASIC2.95□□□□□ -1.94
NPAS3Q8IXF0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 RNU6-859P-201ENST00000362728 107 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 SNORA38-201ENST00000363946 132 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 MIR452-201ENST00000385020 85 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 AL138827.1-201ENST00000402666 306 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 SNRPGP12-201ENST00000449481 213 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 AC069114.2-201ENST00000604699 304 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 AL355297.2-201ENST00000604792 129 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
NPAS3Q8IXF0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
NPAS3Q8IXF0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms