Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 HMGN1P33-201ENST00000432945 451 ntBASIC1.37□□□□□ -2.19
RFX2P48378 AC079140.2-201ENST00000506193 142 ntBASIC1.37□□□□□ -2.19
RFX2P48378 RNY4P20-201ENST00000516678 93 ntBASIC1.37□□□□□ -2.19
RFX2P48378 MIR4285-201ENST00000581001 85 ntBASIC1.37□□□□□ -2.19
RFX2P48378 MIR3192-201ENST00000584920 77 ntBASIC1.37□□□□□ -2.19
RFX2P48378 GHRLOS.1-201ENST00000610995 70 ntBASIC1.37□□□□□ -2.19
RFX2P48378 AC025166.1-201ENST00000612411 163 ntBASIC1.37□□□□□ -2.19
RFX2P48378 AC021613.1-201ENST00000623880 111 ntBASIC1.37□□□□□ -2.19
RFX2P48378 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
RFX2P48378 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.36□□□□□ -2.19
RFX2P48378 SNORA40.18-201ENST00000391200 128 ntBASIC1.36□□□□□ -2.19
RFX2P48378 RNU7-164P-201ENST00000459221 62 ntBASIC1.36□□□□□ -2.19
RFX2P48378 SNORA59A-201ENST00000459326 152 ntBASIC1.36□□□□□ -2.19
RFX2P48378 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.36□□□□□ -2.19
RFX2P48378 AC008834.1-201ENST00000511612 175 ntBASIC1.36□□□□□ -2.19
RFX2P48378 RNA5SP182-201ENST00000516064 82 ntBASIC1.36□□□□□ -2.19
RFX2P48378 SNORD33.1-201ENST00000516213 88 ntBASIC1.36□□□□□ -2.19
RFX2P48378 RNA5SP61-201ENST00000516453 100 ntBASIC1.36□□□□□ -2.19
RFX2P48378 RNU6-250P-201ENST00000516958 103 ntBASIC1.36□□□□□ -2.19
RFX2P48378 MIR4648-201ENST00000580107 72 ntBASIC1.36□□□□□ -2.19
RFX2P48378 MIR3937-201ENST00000580135 106 ntBASIC1.36□□□□□ -2.19
RFX2P48378 AL096861.1-201ENST00000610899 123 ntBASIC1.36□□□□□ -2.19
RFX2P48378 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
RFX2P48378 MIR4251-201ENST00000635819 61 ntBASIC1.36□□□□□ -2.19
RFX2P48378 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
RFX2P48378 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
RFX2P48378 Y_RNA.528-201ENST00000384575 108 ntBASIC1.35□□□□□ -2.19
RFX2P48378 MIRLET7F2-201ENST00000385277 83 ntBASIC1.35□□□□□ -2.19
RFX2P48378 RNU7-73P-201ENST00000458743 63 ntBASIC1.35□□□□□ -2.19
RFX2P48378 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.35□□□□□ -2.19
RFX2P48378 RNU7-123P-201ENST00000515911 60 ntBASIC1.35□□□□□ -2.19
RFX2P48378 RNU2-35P-201ENST00000516446 142 ntBASIC1.35□□□□□ -2.19
RFX2P48378 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.35□□□□□ -2.19
RFX2P48378 MIR548AO-201ENST00000579992 96 ntBASIC1.35□□□□□ -2.19
RFX2P48378 MIR4305-201ENST00000583252 102 ntBASIC1.35□□□□□ -2.19
RFX2P48378 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.35□□□□□ -2.19
RFX2P48378 AL020996.3-201ENST00000606617 222 ntBASIC1.35□□□□□ -2.19
RFX2P48378 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.35□□□□□ -2.19
RFX2P48378 MTND5P18-201ENST00000445624 1801 ntBASIC1.34□□□□□ -2.19
RFX2P48378 Y_RNA.298-201ENST00000364960 107 ntBASIC1.34□□□□□ -2.19
RFX2P48378 Y_RNA.563-201ENST00000384707 108 ntBASIC1.34□□□□□ -2.19
RFX2P48378 SNORA26.6-201ENST00000391256 115 ntBASIC1.34□□□□□ -2.19
RFX2P48378 RNU6-955P-201ENST00000410497 104 ntBASIC1.34□□□□□ -2.19
RFX2P48378 snoU13.16-201ENST00000459350 104 ntBASIC1.34□□□□□ -2.19
RFX2P48378 AC023790.1-201ENST00000482174 347 ntBASIC1.34□□□□□ -2.19
RFX2P48378 MTND5P34-201ENST00000568888 325 ntBASIC1.34□□□□□ -2.19
RFX2P48378 MIR3198-2-201ENST00000577868 80 ntBASIC1.34□□□□□ -2.19
RFX2P48378 AL357312.1-201ENST00000603879 298 ntBASIC1.34□□□□□ -2.19
RFX2P48378 AC084768.2-201ENST00000622736 221 ntBASIC1.34□□□□□ -2.19
RFX2P48378 MIR6717-201ENST00000622747 73 ntBASIC1.34□□□□□ -2.19
RFX2P48378 U6.95-201ENST00000636931 70 ntBASIC1.34□□□□□ -2.19
RFX2P48378 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.34□□□□□ -2.2
RFX2P48378 SNORA25.3-201ENST00000363205 127 ntBASIC1.33□□□□□ -2.2
RFX2P48378 RNU1-42P-201ENST00000364033 160 ntBASIC1.33□□□□□ -2.2
RFX2P48378 Y_RNA.353-201ENST00000365440 108 ntBASIC1.33□□□□□ -2.2
RFX2P48378 SNORA70B-201ENST00000384210 135 ntBASIC1.33□□□□□ -2.2
RFX2P48378 RNU6-1319P-201ENST00000390855 104 ntBASIC1.33□□□□□ -2.2
RFX2P48378 RNU6-747P-201ENST00000390928 104 ntBASIC1.33□□□□□ -2.2
RFX2P48378 RNU6-241P-201ENST00000391148 104 ntBASIC1.33□□□□□ -2.2
RFX2P48378 RNA5SP144-201ENST00000410846 116 ntBASIC1.33□□□□□ -2.2
RFX2P48378 RNU6-177P-201ENST00000411257 104 ntBASIC1.33□□□□□ -2.2
RFX2P48378 AC027119.1-201ENST00000440877 241 ntBASIC1.33□□□□□ -2.2
RFX2P48378 AC009474.2-201ENST00000451383 136 ntBASIC1.33□□□□□ -2.2
RFX2P48378 snoU13.25-201ENST00000458945 104 ntBASIC1.33□□□□□ -2.2
RFX2P48378 DNAJC19P9-201ENST00000555084 351 ntBASIC1.33□□□□□ -2.2
RFX2P48378 AC022523.2-201ENST00000561045 150 ntBASIC1.33□□□□□ -2.2
RFX2P48378 MIR8081-201ENST00000611533 95 ntBASIC1.33□□□□□ -2.2
RFX2P48378 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
RFX2P48378 Y_RNA.346-201ENST00000365385 112 ntBASIC1.32□□□□□ -2.2
RFX2P48378 RNA5SP136-201ENST00000410906 107 ntBASIC1.32□□□□□ -2.2
RFX2P48378 Y_RNA.629-201ENST00000411368 105 ntBASIC1.32□□□□□ -2.2
RFX2P48378 POLR2J4-204ENST00000418424 324 ntBASIC1.32□□□□□ -2.2
RFX2P48378 AC090844.1-201ENST00000422019 156 ntBASIC1.32□□□□□ -2.2
RFX2P48378 AL512326.2-201ENST00000426359 151 ntBASIC1.32□□□□□ -2.2
RFX2P48378 RPS29P23-201ENST00000458635 123 ntBASIC1.32□□□□□ -2.2
RFX2P48378 MIR3152-201ENST00000579801 74 ntBASIC1.32□□□□□ -2.2
RFX2P48378 MIR3683-201ENST00000580847 82 ntBASIC1.32□□□□□ -2.2
RFX2P48378 MIR8055-201ENST00000610739 97 ntBASIC1.32□□□□□ -2.2
RFX2P48378 AL121890.5-201ENST00000620848 304 ntBASIC1.32□□□□□ -2.2
RFX2P48378 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.32□□□□□ -2.2
RFX2P48378 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
RFX2P48378 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
RFX2P48378 SNORA22.1-201ENST00000362701 134 ntBASIC1.31□□□□□ -2.2
RFX2P48378 Y_RNA.171-201ENST00000363760 102 ntBASIC1.31□□□□□ -2.2
RFX2P48378 RNA5SP48-201ENST00000363969 126 ntBASIC1.31□□□□□ -2.2
RFX2P48378 SNORA1.1-201ENST00000364671 133 ntBASIC1.31□□□□□ -2.2
RFX2P48378 Y_RNA.273-201ENST00000364703 102 ntBASIC1.31□□□□□ -2.2
RFX2P48378 RNU6-1065P-201ENST00000384513 106 ntBASIC1.31□□□□□ -2.2
RFX2P48378 RNU6-1104P-201ENST00000384723 104 ntBASIC1.31□□□□□ -2.2
RFX2P48378 RNU6-476P-201ENST00000384726 107 ntBASIC1.31□□□□□ -2.2
RFX2P48378 MIR548A1-201ENST00000385041 97 ntBASIC1.31□□□□□ -2.2
RFX2P48378 MIR548A3-201ENST00000385297 97 ntBASIC1.31□□□□□ -2.2
RFX2P48378 MIR934-201ENST00000401241 83 ntBASIC1.31□□□□□ -2.2
RFX2P48378 RNU6-1064P-201ENST00000410626 104 ntBASIC1.31□□□□□ -2.2
RFX2P48378 AL022718.1-201ENST00000412004 84 ntBASIC1.31□□□□□ -2.2
RFX2P48378 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.31□□□□□ -2.2
RFX2P48378 RNU6-1258P-201ENST00000516911 111 ntBASIC1.31□□□□□ -2.2
RFX2P48378 MIR6129-201ENST00000616087 109 ntBASIC1.31□□□□□ -2.2
RFX2P48378 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.31□□□□□ -2.2
RFX2P48378 SNORD33-201ENST00000362761 85 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 148.7 ms