Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL8A1P27658 MIR22-201ENST00000362190 85 ntBASIC2.69□□□□□ -1.98
COL8A1P27658 RNU6-805P-201ENST00000365643 106 ntBASIC2.69□□□□□ -1.98
COL8A1P27658 RNU6-663P-201ENST00000391105 106 ntBASIC2.69□□□□□ -1.98
COL8A1P27658 AC079600.2-201ENST00000550076 130 ntBASIC2.69□□□□□ -1.98
COL8A1P27658 MIR664A-201ENST00000626086 82 ntBASIC2.69□□□□□ -1.98
COL8A1P27658 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL8A1P27658 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL8A1P27658 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
COL8A1P27658 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.68□□□□□ -1.98
COL8A1P27658 RNA5SP383-201ENST00000362934 120 ntBASIC2.68□□□□□ -1.98
COL8A1P27658 SNORA25B-201ENST00000365507 128 ntBASIC2.68□□□□□ -1.98
COL8A1P27658 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
COL8A1P27658 AC023141.11-201ENST00000508864 202 ntBASIC2.68□□□□□ -1.98
COL8A1P27658 MIR3169-201ENST00000578032 83 ntBASIC2.68□□□□□ -1.98
COL8A1P27658 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
COL8A1P27658 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL8A1P27658 AC093010.3-201ENST00000570269 15214 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
COL8A1P27658 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
COL8A1P27658 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.67□□□□□ -1.98
COL8A1P27658 RNU6-1241P-201ENST00000384536 107 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 RNU6-950P-201ENST00000384651 107 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
COL8A1P27658 RNA5SP292-201ENST00000390974 118 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 SNRPGP12-201ENST00000449481 213 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 RPS27P29-201ENST00000463110 252 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 SNORA18.5-201ENST00000516616 101 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 SNORA64.4-201ENST00000516632 81 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 AC133485.1-201ENST00000567176 124 ntBASIC2.67□□□□□ -1.98
COL8A1P27658 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL8A1P27658 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL8A1P27658 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
COL8A1P27658 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
COL8A1P27658 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL8A1P27658 RNU6-208P-201ENST00000362431 107 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 SNORA38-201ENST00000363946 132 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 RNA5SP139-201ENST00000364340 117 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 RNU6-1019P-201ENST00000364424 107 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 RNY1P13-201ENST00000365030 105 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 CD24P4-201ENST00000382840 243 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 MIR154-201ENST00000385243 84 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 RNU4-83P-201ENST00000410863 133 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 HSPE1P9-201ENST00000440046 311 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 SNORD109B-201ENST00000458961 67 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 SNORD109A-201ENST00000459128 67 ntBASIC2.66□□□□□ -1.98
COL8A1P27658 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
COL8A1P27658 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.98
COL8A1P27658 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.98
COL8A1P27658 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
COL8A1P27658 U8.2-201ENST00000363156 134 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 RNU6-23P-201ENST00000363283 107 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 SNORA68.1-201ENST00000364537 132 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 RNY1P2-201ENST00000364820 117 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 RNA5SP247-201ENST00000411181 105 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 AC087499.2-201ENST00000432861 149 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 RPL23AP6-201ENST00000446637 472 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 MIR4536-1-201ENST00000583537 88 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 NEAT1_2.1-201ENST00000620525 105 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 MIR622-201ENST00000638396 96 ntBASIC2.65□□□□□ -1.99
COL8A1P27658 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL8A1P27658 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL8A1P27658 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL8A1P27658 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL8A1P27658 SNORD115-31-201ENST00000365318 82 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 SNORA72.6-201ENST00000384520 129 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 AC244636.1-201ENST00000421152 228 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 RNU7-156P-201ENST00000517214 74 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 AC005520.4-201ENST00000604337 90 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 AC069114.2-201ENST00000604699 304 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 AC067747.1-201ENST00000608026 250 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 AC022513.1-201ENST00000624512 117 ntBASIC2.64□□□□□ -1.99
COL8A1P27658 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL8A1P27658 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.64□□□□□ -1.99
COL8A1P27658 MIR9-2-201ENST00000384838 87 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 RNU6-205P-201ENST00000390858 107 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 RNA5SP229-201ENST00000410809 99 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 AC015818.7-201ENST00000428754 109 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 snoU13.15-201ENST00000459407 104 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 AC023790.1-201ENST00000482174 347 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 MIR2276-201ENST00000516886 89 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 RNU6-850P-201ENST00000516934 103 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 RNA5SP380-201ENST00000517190 98 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 RNU6-711P-201ENST00000517255 106 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 SNORD53-201ENST00000579969 78 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 AC090897.1-201ENST00000580909 226 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 AL357312.1-201ENST00000603879 298 ntBASIC2.63□□□□□ -1.99
COL8A1P27658 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.63□□□□□ -1.99
COL8A1P27658 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL8A1P27658 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL8A1P27658 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL8A1P27658 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL8A1P27658 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
COL8A1P27658 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
COL8A1P27658 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.62□□□□□ -1.99
COL8A1P27658 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL8A1P27658 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL8A1P27658 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.62□□□□□ -1.99
COL8A1P27658 SNORD56.3-201ENST00000363507 71 ntBASIC2.62□□□□□ -1.99
COL8A1P27658 AL513328.1-201ENST00000446460 224 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 286.5 ms