Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MIR548D2-201ENST00000384955 97 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 MIR450A2-201ENST00000385022 100 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 MIR1912-201ENST00000410389 80 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 CST2P1-201ENST00000425770 87 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 RPL39P25-201ENST00000449384 154 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 RNU6-158P-201ENST00000517104 100 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 RNU6-762P-201ENST00000517107 102 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 AP003484.1-201ENST00000530974 250 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.91□□□□□ -2.1
COL3A1P02461 MIR4452-201ENST00000583004 71 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 MIR4305-201ENST00000583252 102 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 MIR3660-201ENST00000584845 100 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 RNU4-36P-201ENST00000364294 144 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 U8.5-201ENST00000364528 136 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 MIR488-201ENST00000365739 83 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 MT-TI-201ENST00000387365 69 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 MIR1304-201ENST00000408243 91 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 SNRPGP14-201ENST00000435400 219 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 AC004223.1-201ENST00000479840 271 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 RNU7-123P-201ENST00000515911 60 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 RNA5SP61-201ENST00000516453 100 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 SNORD36C-201ENST00000516733 66 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 DEFB131E-201ENST00000532329 154 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 AC141557.1-201ENST00000540982 400 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 SNORD115-40-201ENST00000606510 82 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 AL162726.3-218ENST00000636401 95 ntBASIC1.9□□□□□ -2.11
COL3A1P02461 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
COL3A1P02461 RNU6-1104P-201ENST00000384723 104 ntBASIC1.89□□□□□ -2.11
COL3A1P02461 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.89□□□□□ -2.11
COL3A1P02461 AC107297.1-201ENST00000459991 176 ntBASIC1.89□□□□□ -2.11
COL3A1P02461 RNU6-904P-201ENST00000516206 101 ntBASIC1.89□□□□□ -2.11
COL3A1P02461 AP003327.1-201ENST00000529684 127 ntBASIC1.89□□□□□ -2.11
COL3A1P02461 MIR3122-201ENST00000577243 73 ntBASIC1.89□□□□□ -2.11
COL3A1P02461 AC022709.1-201ENST00000615967 87 ntBASIC1.89□□□□□ -2.11
COL3A1P02461 ICE2P2-201ENST00000483823 2787 ntBASIC1.89□□□□□ -2.11
COL3A1P02461 RNU6-862P-201ENST00000362804 105 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 RNA5SP173-201ENST00000364857 136 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 Y_RNA.354-201ENST00000365448 111 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 SNORA25B-201ENST00000365507 128 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 SNORD38C-201ENST00000384381 69 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 RNU6-1072P-201ENST00000384703 107 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 RNU6-443P-201ENST00000384780 107 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 AC018868.1-201ENST00000491307 315 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 RNU7-6P-201ENST00000516845 62 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 MIR3616-201ENST00000584070 92 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.88□□□□□ -2.11
COL3A1P02461 RNU6-53P-201ENST00000365367 106 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 RNY1P7-201ENST00000384743 110 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 SNORA19.1-201ENST00000410656 129 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 RNU6-938P-201ENST00000411285 103 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.88□□□□□ -2.11
COL3A1P02461 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.88□□□□□ -2.11
COL3A1P02461 AC068338.1-201ENST00000565567 176 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 AC078899.2-201ENST00000595282 212 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 FAM71BP1-201ENST00000604431 523 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 AC091932.4-201ENST00000623386 200 ntBASIC1.88□□□□□ -2.11
COL3A1P02461 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL3A1P02461 MIR342-201ENST00000362212 99 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 Y_RNA.10-201ENST00000362371 110 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 SNORA33-201ENST00000363664 130 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 Y_RNA.507-201ENST00000384500 99 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 RNU6-816P-201ENST00000390914 107 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 RNU6-220P-201ENST00000390919 107 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 RNU6-1268P-201ENST00000391214 107 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 RNU6-1239P-201ENST00000391310 107 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 SCARNA23-201ENST00000516060 130 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.87□□□□□ -2.11
COL3A1P02461 AC062037.1-201ENST00000605302 128 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 AL449363.1-201ENST00000617815 186 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 MALAT1.1-201ENST00000618249 95 ntBASIC1.87□□□□□ -2.11
COL3A1P02461 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL3A1P02461 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL3A1P02461 MAPK10-266ENST00000641066 6555 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 Y_RNA.107-201ENST00000363190 121 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
COL3A1P02461 Y_RNA.601-201ENST00000410500 113 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 AC245047.3-201ENST00000429428 127 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 AL035398.1-201ENST00000430869 322 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 PGBD4P5-201ENST00000445958 426 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 RNU2-35P-201ENST00000516446 142 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 AC026421.1-201ENST00000519101 163 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 SNORA28-201ENST00000606769 126 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 AC015726.2-201ENST00000620112 122 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 PVT1_3.1-201ENST00000620853 95 ntBASIC1.86□□□□□ -2.11
COL3A1P02461 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.86□□□□□ -2.11
COL3A1P02461 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.85□□□□□ -2.11
COL3A1P02461 RNY3P2-201ENST00000362918 102 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 RNA5SP325-201ENST00000363756 130 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 RNA5SP493-201ENST00000364115 91 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 RNU6-573P-201ENST00000383938 106 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 SNORA27-201ENST00000384323 126 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 RNU6-424P-201ENST00000384367 105 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 RNU6-163P-201ENST00000384396 106 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 RN7SKP200-201ENST00000410564 320 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 RNU2-40P-201ENST00000410833 196 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 AL022718.1-201ENST00000412004 84 ntBASIC1.85□□□□□ -2.11
COL3A1P02461 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.85□□□□□ -2.11
COL3A1P02461 SNX2P2-201ENST00000424553 323 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms