Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL078603.1-201ENST00000603824 313 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RMST_2.1-201ENST00000617263 136 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR561-201ENST00000385216 97 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNA5SP181-201ENST00000410246 98 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNA5SP261-201ENST00000410536 106 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RPS12P2-201ENST00000439728 269 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR7515-201ENST00000637837 67 ntBASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 SNORA22.1-201ENST00000362701 134 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.94-201ENST00000363068 106 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.99-201ENST00000363138 105 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 SNORA70.7-201ENST00000384159 133 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-163P-201ENST00000384396 106 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU1-101P-201ENST00000391171 127 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR1267-201ENST00000408723 78 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC007536.1-201ENST00000533382 349 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR376B-201ENST00000614515 100 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR6873-201ENST00000622788 63 ntBASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNA5SP139-201ENST00000364340 117 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.470-201ENST00000384307 117 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR889-201ENST00000401280 79 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC090844.1-201ENST00000422019 156 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC069257.2-201ENST00000441819 155 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-1258P-201ENST00000516911 111 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-667P-201ENST00000517186 102 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AL355297.2-201ENST00000604792 129 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC103810.7-201ENST00000607821 91 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC027279.3-201ENST00000625055 122 ntBASIC3.16□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.36-201ENST00000362602 112 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNA5SP456-201ENST00000364002 114 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.494-201ENST00000384432 111 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-160P-201ENST00000384591 107 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.609-201ENST00000410669 89 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA28-201ENST00000606769 126 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL442644.1-201ENST00000454390 3105 ntBASIC3.15□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.30-201ENST00000362572 97 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA1.2-201ENST00000365189 134 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-45P-201ENST00000459460 63 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNA5SP220-201ENST00000516298 104 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-53P-201ENST00000516705 60 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 U4.3-201ENST00000621047 82 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR6841-201ENST00000637129 72 ntBASIC3.14□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORD38.1-201ENST00000363863 68 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC015922.2-201ENST00000435593 184 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR1270-201ENST00000459320 83 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SEM1P1-201ENST00000506694 209 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-86P-201ENST00000606534 107 ntBASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-862P-201ENST00000362804 105 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORD114-6-201ENST00000364393 72 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA17.3-201ENST00000391159 129 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL359511.1-201ENST00000402970 211 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 STAG3L5P-204ENST00000443759 179 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-181P-201ENST00000517234 74 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 DNAJC19P9-201ENST00000555084 351 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR5092-201ENST00000583139 88 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR4712-201ENST00000583750 82 ntBASIC3.12□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL445685.2-201ENST00000422551 342 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL161932.1-201ENST00000437408 146 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-34P-201ENST00000459394 64 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC234781.5-201ENST00000508429 271 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC023141.11-201ENST00000508864 202 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC103810.6-201ENST00000606708 136 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORD3E-202ENST00000627253 216 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC007336.1-201ENST00000576365 3828 ntBASIC3.11□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-457P-201ENST00000363999 107 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.205-201ENST00000364128 113 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6-1163P-201ENST00000364516 107 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 Y_RNA.565-201ENST00000384719 101 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC145423.2-201ENST00000610631 239 ntBASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA32-201ENST00000384072 121 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 SNORA11.4-201ENST00000408823 129 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AL606517.2-201ENST00000442855 241 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 AC104389.3-201ENST00000445629 235 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 RNU7-2P-201ENST00000516096 62 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 MIR6504-201ENST00000613520 61 ntBASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.09□□□□□ -1.91
SENP3-EIF4A1A0A087X0R7 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIRLET7C-201ENST00000362160 84 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 257.9 ms