Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HIF3AQ9Y2N7 AC005336.3-201ENST00000623833 2679 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.56□□□□□ -2
HIF3AQ9Y2N7 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
HIF3AQ9Y2N7 Y_RNA.4-201ENST00000362333 112 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 MIR520A-201ENST00000384862 85 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 MIR452-201ENST00000385020 85 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 MIR136-201ENST00000385207 82 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 SNORA48.1-201ENST00000390879 135 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 AC090844.1-201ENST00000422019 156 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 RNVU1-2-201ENST00000516326 135 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 SNORA9.3-201ENST00000516383 129 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 DNAJC19P9-201ENST00000555084 351 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 MIR4666B-201ENST00000578142 81 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 AL020996.3-201ENST00000606617 222 ntBASIC2.56□□□□□ -2
HIF3AQ9Y2N7 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
HIF3AQ9Y2N7 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.56□□□□□ -2
HIF3AQ9Y2N7 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 MIR26A1-201ENST00000362205 77 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 MIR422A-201ENST00000362286 90 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 SNORD116-10-201ENST00000363791 102 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 SNORD58A-201ENST00000383875 65 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 Y_RNA.426-201ENST00000384068 113 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 RNU6-1307P-201ENST00000391012 103 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 HMGN2P39-201ENST00000398005 273 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 RPS12P2-201ENST00000439728 269 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 AC003982.1-202ENST00000469928 248 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 RN7SL499P-201ENST00000481141 276 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 UBL5P1-201ENST00000507979 193 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 RNU6-65P-201ENST00000516332 98 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 MIR548AR-201ENST00000582191 57 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 MIR3605-201ENST00000583214 100 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 AC006023.1-201ENST00000603944 259 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 AC243994.1-201ENST00000618627 109 ntBASIC2.55□□□□□ -2
HIF3AQ9Y2N7 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HIF3AQ9Y2N7 RNU6-342P-201ENST00000384521 104 ntBASIC2.54□□□□□ -2
HIF3AQ9Y2N7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.54□□□□□ -2
HIF3AQ9Y2N7 RNA5SP261-201ENST00000410536 106 ntBASIC2.54□□□□□ -2
HIF3AQ9Y2N7 RNU2-7P-201ENST00000410794 178 ntBASIC2.54□□□□□ -2
HIF3AQ9Y2N7 SCARNA16.3-201ENST00000516595 184 ntBASIC2.54□□□□□ -2
HIF3AQ9Y2N7 SUB1P4-201ENST00000566062 339 ntBASIC2.54□□□□□ -2
HIF3AQ9Y2N7 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HIF3AQ9Y2N7 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
HIF3AQ9Y2N7 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.53□□□□□ -2
HIF3AQ9Y2N7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.53□□□□□ -2
HIF3AQ9Y2N7 RNU6-652P-201ENST00000365488 107 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 MIR526A1-201ENST00000384897 85 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 HMGN2P35-201ENST00000412164 270 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 AC022018.1-201ENST00000430685 241 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 SNORD123-201ENST00000459473 70 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 RNU7-2P-201ENST00000516096 62 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC2.53□□□□□ -2
HIF3AQ9Y2N7 SEPT14P17-201ENST00000617978 177 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 MIR548BB-201ENST00000626714 66 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 AC006160.2-201ENST00000637708 154 ntBASIC2.53□□□□□ -2
HIF3AQ9Y2N7 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.53□□□□□ -2
HIF3AQ9Y2N7 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-1296P-201ENST00000383879 107 ntBASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 MIR206-201ENST00000384872 86 ntBASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 AC245047.7-201ENST00000440265 293 ntBASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 RNA5SP341-201ENST00000516261 117 ntBASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-826P-201ENST00000516827 104 ntBASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 RNA5SP437-201ENST00000517249 129 ntBASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 MIR4325-201ENST00000583049 90 ntBASIC2.52□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-112P-201ENST00000363599 104 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-1163P-201ENST00000364516 107 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 Y_RNA.430-201ENST00000384081 110 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 SNORA24-201ENST00000384096 131 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 MIR34C-201ENST00000384831 77 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 Y_RNA.609-201ENST00000410669 89 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 RNA5SP501-201ENST00000410990 112 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 RNA5SP270-201ENST00000411361 118 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 COTL1P1-201ENST00000422309 375 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 RNA5SP481-201ENST00000516814 122 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 MIR4439-201ENST00000583746 80 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 AC006386.2-201ENST00000624491 75 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 AC012005.1-201ENST00000624575 75 ntBASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-296P-201ENST00000384608 107 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 AL139132.1-201ENST00000431587 344 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 RPS29P28-201ENST00000446439 141 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 RNU7-73P-201ENST00000458743 63 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-1006P-201ENST00000516998 103 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 MIR4709-201ENST00000577272 72 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 AC021506.2-201ENST00000612354 169 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 AL513423.1-201ENST00000621695 132 ntBASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HIF3AQ9Y2N7 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 192.9 ms