Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 AC091895.1-201ENST00000624494 256 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 SNORD113-1-201ENST00000365321 69 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.370-201ENST00000365589 108 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 SNORA19-201ENST00000384737 128 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 MIR1323-201ENST00000408090 73 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 AC027119.1-201ENST00000440877 241 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 AC245517.4-201ENST00000448601 281 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 RNA5SP272-201ENST00000516095 111 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 MIR4285-201ENST00000581001 85 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 MIR5197-201ENST00000583721 112 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 AP000648.3-201ENST00000623539 4507 ntBASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LIMCH1Q9UPQ0 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.251-201ENST00000364551 99 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.338-201ENST00000365320 114 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 MIR517C-201ENST00000385103 95 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 SNORA40-201ENST00000388090 126 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.586-201ENST00000391146 98 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 RNU6-257P-201ENST00000410238 98 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 RNU6-938P-201ENST00000411285 103 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 RPL30P7-201ENST00000479312 323 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 RNU7-181P-201ENST00000517234 74 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 MIR3937-201ENST00000580135 106 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 AP001340.1-201ENST00000624405 217 ntBASIC1.76□□□□□ -2.13
LIMCH1Q9UPQ0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.241-201ENST00000364470 117 ntBASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 SNORA70.7-201ENST00000384159 133 ntBASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.584-201ENST00000391090 114 ntBASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 SNORD36C-201ENST00000516733 66 ntBASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 RNU6-922P-201ENST00000516753 99 ntBASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 MIR548AR-201ENST00000582191 57 ntBASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 MIR7111-201ENST00000619751 72 ntBASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.75□□□□□ -2.13
LIMCH1Q9UPQ0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.4-201ENST00000362333 112 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 RNU6-1336P-201ENST00000383886 109 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.420-201ENST00000384043 110 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.440-201ENST00000384120 114 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 SNORA27-201ENST00000384323 126 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.537-201ENST00000384626 109 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 SNORA20-201ENST00000384662 132 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 MIR520C-201ENST00000385005 87 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 MTND4LP9-201ENST00000427694 174 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 MTATP6P21-201ENST00000440681 189 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 RNU7-80P-201ENST00000459562 61 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 RNA5SP445-201ENST00000515889 115 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 MIR4764-201ENST00000580680 88 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 TUG1_4.1-201ENST00000619464 181 ntBASIC1.74□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.164-201ENST00000363709 102 ntBASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 RNU1-42P-201ENST00000364033 160 ntBASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 SNORD18B-201ENST00000365659 72 ntBASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 Y_RNA.454-201ENST00000384224 113 ntBASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 RNU6-959P-201ENST00000384671 107 ntBASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 SNORD41-201ENST00000386967 70 ntBASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 RPS26P48-201ENST00000491713 339 ntBASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.73□□□□□ -2.13
LIMCH1Q9UPQ0 RNY1P11-201ENST00000363759 113 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 RNA5SP190-201ENST00000365222 118 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 RNU6-460P-201ENST00000391158 108 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 RPL39P39-201ENST00000455840 151 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 RNU7-96P-201ENST00000459535 64 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 RNU2-13P-201ENST00000515909 113 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 AC019176.1-201ENST00000518519 225 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 AP001328.1-201ENST00000528550 176 ntBASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.72□□□□□ -2.13
LIMCH1Q9UPQ0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.120-201ENST00000363304 110 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.226-201ENST00000364337 114 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 MIR539-201ENST00000365690 78 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-1117P-201ENST00000384525 104 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 MIR548I2-201ENST00000408348 149 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 AL354695.1-201ENST00000427935 228 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 RNU1-98P-201ENST00000458992 160 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 RPS29P24-201ENST00000486345 171 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 RNU7-70P-201ENST00000516941 66 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-902P-201ENST00000517212 91 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 AC090821.2-201ENST00000523552 176 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 SNORD53B-201ENST00000577887 78 ntBASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.351-201ENST00000365436 96 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 SNORD28B-201ENST00000390993 75 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 SNORA67.6-201ENST00000391093 99 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 RNA5SP61-201ENST00000516453 100 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-62P-201ENST00000516526 102 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 MIR3664-201ENST00000579074 99 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.7□□□□□ -2.14
LIMCH1Q9UPQ0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.52-201ENST00000362760 96 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-60P-201ENST00000364792 103 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-915P-201ENST00000364943 103 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 SNORA24-201ENST00000384096 131 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 201.2 ms