Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC008834.1-201ENST00000511612 175 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 Y_RNA.676-201ENST00000516393 96 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 Y_RNA.686-201ENST00000516548 134 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 AC019176.1-201ENST00000518519 225 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 AC012493.3-201ENST00000604494 112 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
TDP1Q9NUW8 RNU6-257P-201ENST00000410238 98 ntBASIC1.75□□□□□ -2.13
TDP1Q9NUW8 RNU4-61P-201ENST00000411243 107 ntBASIC1.75□□□□□ -2.13
TDP1Q9NUW8 RPL31P63-201ENST00000422565 375 ntBASIC1.75□□□□□ -2.13
TDP1Q9NUW8 RN7SL274P-201ENST00000492268 272 ntBASIC1.75□□□□□ -2.13
TDP1Q9NUW8 snoU13.31-201ENST00000607291 104 ntBASIC1.75□□□□□ -2.13
TDP1Q9NUW8 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
TDP1Q9NUW8 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.75□□□□□ -2.13
TDP1Q9NUW8 AP001340.1-201ENST00000624405 217 ntBASIC1.75□□□□□ -2.13
TDP1Q9NUW8 RNU6-915P-201ENST00000364943 103 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 MIR570-201ENST00000384917 97 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 RNU4-62P-201ENST00000410125 130 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 AC107297.1-201ENST00000459991 176 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 RNU2-13P-201ENST00000515909 113 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 RNA5SP236-201ENST00000516169 116 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 RNU7-43P-201ENST00000516554 64 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 AP001328.1-201ENST00000528550 176 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 MIR3618-201ENST00000580330 88 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 MIR4764-201ENST00000580680 88 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 MIR4303-201ENST00000581299 66 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 AP001485.1-201ENST00000604799 199 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.74□□□□□ -2.13
TDP1Q9NUW8 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.74□□□□□ -2.13
TDP1Q9NUW8 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.73□□□□□ -2.13
TDP1Q9NUW8 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
TDP1Q9NUW8 SNORD33-201ENST00000362761 85 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 Y_RNA.351-201ENST00000365436 96 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 MIR520C-201ENST00000385005 87 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 SNORA40-201ENST00000388090 126 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 SNX2P2-201ENST00000424553 323 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 MTND4LP9-201ENST00000427694 174 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 AC027119.1-201ENST00000440877 241 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 RPS29P24-201ENST00000486345 171 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 RNU6-1053P-201ENST00000515930 101 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 AC091895.1-201ENST00000624494 256 ntBASIC1.73□□□□□ -2.13
TDP1Q9NUW8 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.72□□□□□ -2.13
TDP1Q9NUW8 SNORD18B-201ENST00000365659 72 ntBASIC1.72□□□□□ -2.13
TDP1Q9NUW8 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.72□□□□□ -2.13
TDP1Q9NUW8 Y_RNA.586-201ENST00000391146 98 ntBASIC1.72□□□□□ -2.13
TDP1Q9NUW8 TMSB4XP3-201ENST00000445144 114 ntBASIC1.72□□□□□ -2.13
TDP1Q9NUW8 SNORD111.1-201ENST00000516421 86 ntBASIC1.72□□□□□ -2.13
TDP1Q9NUW8 MIR3937-201ENST00000580135 106 ntBASIC1.72□□□□□ -2.13
TDP1Q9NUW8 MIR3910-1-201ENST00000580936 111 ntBASIC1.72□□□□□ -2.13
TDP1Q9NUW8 Y_RNA.4-201ENST00000362333 112 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 RNU6-508P-201ENST00000363231 103 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 AL603914.1-201ENST00000401964 204 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 AP1B1P2-201ENST00000416196 106 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 MTATP6P21-201ENST00000440681 189 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 RNU7-96P-201ENST00000459535 64 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 RNU6-998P-201ENST00000515894 101 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.690-201ENST00000516603 95 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 MIR4791-201ENST00000607666 84 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 GHRLOS.1-201ENST00000610995 70 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 AC008133.2-201ENST00000624540 351 ntBASIC1.71□□□□□ -2.14
TDP1Q9NUW8 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.7□□□□□ -2.14
TDP1Q9NUW8 MIR342-201ENST00000362212 99 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 SNORA24-201ENST00000384096 131 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 SNORA70.7-201ENST00000384159 133 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 RNU6-1065P-201ENST00000384513 106 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.537-201ENST00000384626 109 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 RNU1-78P-201ENST00000391248 165 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 RPS29P29-201ENST00000456396 171 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 RNU7-80P-201ENST00000459562 61 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.7□□□□□ -2.14
TDP1Q9NUW8 SNORD53B-201ENST00000577887 78 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.7□□□□□ -2.14
TDP1Q9NUW8 AL357312.1-201ENST00000603879 298 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 AC243994.1-201ENST00000618627 109 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 AC091932.4-201ENST00000623386 200 ntBASIC1.7□□□□□ -2.14
TDP1Q9NUW8 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.164-201ENST00000363709 102 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 RNU6-309P-201ENST00000364573 106 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 RNU6-1067P-201ENST00000384752 107 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 MIR934-201ENST00000401241 83 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 RNU7-67P-201ENST00000459003 62 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 RNU7-41P-201ENST00000515917 61 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 RNU7-70P-201ENST00000516941 66 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 MIR4422-201ENST00000581938 83 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 U7.2-201ENST00000607576 63 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 AL512598.1-201ENST00000610158 273 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 AL096861.1-201ENST00000610899 123 ntBASIC1.69□□□□□ -2.14
TDP1Q9NUW8 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.69□□□□□ -2.14
TDP1Q9NUW8 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
TDP1Q9NUW8 RNU1-133P-201ENST00000364867 167 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.454-201ENST00000384224 113 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 SNORA51.10-201ENST00000384418 136 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 RPS27P16-201ENST00000425758 201 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 AL035398.1-201ENST00000430869 322 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.651-201ENST00000459380 103 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 RNA5SP445-201ENST00000515889 115 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.692-201ENST00000516627 105 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 RNU6-958P-201ENST00000516995 106 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 DNAJC19P9-201ENST00000555084 351 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 AL022345.2-201ENST00000606307 135 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 172.3 ms